PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C021131P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 29398.1 Da PI: 6.3119 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.5 | 3.2e-50 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelv++yL kk+ +++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ v++ MELO3C021131P1 10 LPPGFRFYPSDEELVCHYLYKKIGNEEALR-GTLVEIDLHTCEPWQLPEVAKLNGNEWYFFSFRDRKYSTGFRTNRATTAGYWKATGKDRMVMDP 103 79**********************999555.78***************8888899***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+e vg++ktLvfy++rap+g kt W+mhe+r+ MELO3C021131P1 104 tKKEIVGMRKTLVFYRNRAPNGIKTGWIMHEFRI 137 77788***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.316 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIGNEEALRG TLVEIDLHTC EPWQLPEVAK 60 LNGNEWYFFS FRDRKYSTGF RTNRATTAGY WKATGKDRMV MDPTKKEIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRIETP HMPPKEDWVL CRVFHKTKSD QDTTETTTTK HTTSHFTFDA 180 MMAESSSYYL LPNNVEFLPS YNSNGLLPLD INLEETSFNG SSYGVGDSNS EEMKYEIIDN 240 NIHNNAFPFN YFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-48 | 9 | 161 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-48 | 9 | 161 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-48 | 9 | 161 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-48 | 9 | 161 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-48 | 9 | 161 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-48 | 9 | 161 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-48 | 9 | 161 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681802 | 0.0 | LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458103.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 3e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1S3C7P3 | 0.0 | A0A1S3C7P3_CUCME; NAC domain-containing protein 21/22-like | ||||
STRING | XP_008458103.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-90 | NAC domain containing protein 74 |