PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021001P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 706aa    MW: 78009.9 Da    PI: 6.1891
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021001P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.54e-21565662296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W+++++y  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ +++
  MELO3C021001P1 565 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCG 656
                     79*************************999999********7778*********777777777777.********************..566999 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +++++ 
  MELO3C021001P1 657 KYMIRG 662
                     888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-29558674IPR015300DNA-binding pseudobarrel domain
CDDcd100151.17E-36562663No hitNo description
SuperFamilySSF1019362.49E-23563659IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.1E-21564666IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983564666IPR003340B3 DNA binding domain
PfamPF023622.4E-17565661IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDHTQIWLHD HQQQHQNHQN FLSDNDDDTL MFYSDFPPLP DFPCMSSSSS SSSTPAPVKA  60
TASSSSSSSS SSATSWALLK SDGDEITEDI KPNYDNNKLS SPVAETGFDC TDEMMMESFG  120
YMDLLEDSNE FFDPSCIFQN EEQQEEKVVV AEEEDQEGNL EDLQLERFEE VEMEDLMMMH  180
GGDESKDNSN NNNINENINV EKLQNAVVEE EDMAKVFLEW LRSNRETVSA DDLRNVRIKK  240
ATIESAARRL GGGKEGMKQL LKLVLQWVQT NHLHKRKFRD LTVETDAHFL GFQNNPNSSS  300
NLPWIQTPPP LPPPPLYSPS MIGYVPATGG DAYGGGRGFS DHYGQLLDSS LSWSNNNSGN  360
NNNNFSGQFG LPPSHFNSFV DNFPTGPPLP PPQPQGFAAG YGGAHQFPYV GQYFQGRGGA  420
GGGGGGGGGG ENGLVRLDSS ATKEARKKRM ARQRRFSVHH RHHHGGHHGN GHQNQHPTQM  480
NPNASDHCNM ATTTQPNAGN WVSWPSPTGA GASSTTSSGF PVDSSPVHTA DRSNSSLQNQ  540
NYPPRIPTER RQGWKPEKNL KFLLQKVLKQ SDVGNLGRIV LPKKEAETHL PELEARDGIS  600
IAMEDIGTSR VWNMRYRYWP NNKSRMYLLE NTGDFVRANG LQEGDFIVIY SDVKCGKYMI  660
RGVKVRQPGS KPESKRPGKT QRSHTTAAGN GSSPSPTTMA TPKRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-375606671108B3 domain-containing transcription factor FUS3
6j9b_D2e-375606671108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818020.0LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458109.10.0PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLA0A1S3C7P70.0A0A1S3C7P7_CUCME; B3 domain-containing transcription factor ABI3
STRINGXP_008458109.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-87B3 family protein