PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020971P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 285aa    MW: 31081.8 Da    PI: 6.0462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020971P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20147197256
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+W+AeIrd +     r  r++lg+f+tae Aa+a+++a+++++g+
  MELO3C020971P1 147 RYRGVRQRP-WGKWAAEIRDpF-----RaVRVWLGTFDTAEAAAEAYDEAALRFRGN 197
                     7********.**********66.....68*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.37147204IPR001471AP2/ERF domain
PfamPF008471.0E-13147196IPR001471AP2/ERF domain
SMARTSM003804.8E-35147210IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22147205IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-32147205IPR001471AP2/ERF domain
PRINTSPR003672.0E-11148159IPR001471AP2/ERF domain
CDDcd000185.30E-15155206No hitNo description
PRINTSPR003672.0E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MCLIIVINPK VANSSSRDFY SDQNEWLHQY STSFSGLNRE EETSVIVSAL TQVVVGDQVS  60
PRGGSGSGGG VGSGTLSTGS SSSSYNNSHK RGRQQDLDDD QQHSLLSSVS NASHYSPTFN  120
DGRNVVGIYE YEREARRNRG EEEGRRRYRG VRQRPWGKWA AEIRDPFRAV RVWLGTFDTA  180
EAAAEAYDEA ALRFRGNKAK LNFPENVRLR PSPAPTTPNQ YAVVSESPAI NLYDQMSLTS  240
SMTSPPSTAV GLVSPSSWSG GHGGDGGFSV PQWTPEFNEY SSPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21146207163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-21146207466ATERF1
3gcc_A1e-21146207466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457918.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A1S3C6M00.0A0A1S3C6M0_CUCME; ethylene-responsive transcription factor ERF110-like
STRINGXP_008457918.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2457533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-22ERF family protein