PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020619P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 699aa    MW: 79435 Da    PI: 6.3198
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020619P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.72.9e-1153286953373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla+yf+++L++rla  ++ ly  ++++ets    +e l+a+++f +++P+ ++s++ 
  MELO3C020619P1 328 TLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAA-GTPLYLPFASNETS---AAEILKAYQMFIKACPFRRMSYFY 418
                     69**************************************************9.99999777777777...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      N++Il+ +e+ +++Hi+Df+i +GlQWp+L+q L+ Rp+gpp+lRiTg++ p++g   +e++e+tg+rLa+++++++vpfe +v +a+++e+++
  MELO3C020619P1 419 GNRTILKLAEKVSTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGfrPAERVEQTGRRLAHYCKRFNVPFEHKV-LAQKWETVR 512
                     *******************************************************9****************************9.6******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+++++E ++V +++++++++de+v  +s+rd+vLkl+++++P+++++   + + n++ F +rf eal yys+lfd++ea++pr++ +r   
  MELO3C020619P1 513 YEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRFLC 607
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     E+e+lgr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++  k+++ ++++ + + ++++++  ++++gWk+r + ++S+W
  MELO3C020619P1 608 EKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFNIDQDGSWMLQGWKGRIIDALSCW 695
                     **********************************************************99888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.401300676IPR005202Transcription factor GRAS
PfamPF035141.0E-112328695IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDNLLDDFPN SWNNTYPFHP HLSTSLFKVT RDVVDPLQIP AKSHQHQHQH RQLTNNSSSS  60
PSSSSSEGDS PDSHDTSNTM LKYITEMLMD EGEDLKTQPC MLLDCLALQA AEKSFYDVLG  120
QKYPPSPIGD SSCCDRGLGG EDESESFNGN SDSSFFHPFQ NSVLSQDSFL GMQFLGHFRQ  180
GAEEASKFLP VNGRFGTIDL DNDSSSSTSF PSRPVDFSWV AAENDGRSSL ENGLLREKKN  240
RLREDSDEEL RSSKQSANFA DDNSLSDLFD EVLLCRGESR QSPPSCGSDE SSESEANKKS  300
RGRGKRKGKK SSRSRKQENS VEVVDLWTLL TQCAQAVSNY DQRTANELLN QIRQHSNPSG  360
DGNQRLAHYF AKGLETRLAA GTPLYLPFAS NETSAAEILK AYQMFIKACP FRRMSYFYGN  420
RTILKLAEKV STLHIVDFGI LYGLQWPCLI QRLSRRPGGP PKLRITGIEL PQPGFRPAER  480
VEQTGRRLAH YCKRFNVPFE HKVLAQKWET VRYEDLNLDR DELTIVTCMF RMKNVPDETV  540
VANSPRDRVL KLIRKINPDL FIHEVTNGSF NTPFFNTRFK EALFYYSSLF DMYEATVPRD  600
NPQRFLCEKE ILGRDIMNVI ACEGLERVER PETYKQWQVR NTRAGFKQVP LDQDLLKSVE  660
KIVNTEYHQD FNIDQDGSWM LQGWKGRIID ALSCWVVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-463306958374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457465.10.0PREDICTED: scarecrow-like protein 14
TrEMBLA0A1S3C6V50.0A0A1S3C6V5_CUCME; scarecrow-like protein 14
STRINGXP_008457465.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-178GRAS family protein