PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020484P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 779aa    MW: 86065.7 Da    PI: 6.8563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020484P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-19245344198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++
  MELO3C020484P1 245 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPVRVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID-PGGQ 337
                     99**************************555556677***************9989999999***9.********************887.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  MELO3C020484P1 338 LVMGFRK 344
                     7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-30241349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-21242346IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-24243344No hitNo description
PfamPF023622.8E-16245344IPR003340B3 DNA binding domain
SMARTSM010192.8E-22245345IPR003340B3 DNA binding domain
PROSITE profilePS5086310.955245346IPR003340B3 DNA binding domain
PROSITE profilePS5105014.464483533IPR011124Zinc finger, CW-type
PfamPF074962.0E-10488530IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MELYFFLLQI RRDEISNGFD AVTGGNVGLL RPASVKDQVV GNGTNEEKLL ELCNIMEANE  60
PDHFQKSQRV DRSASPAQNR GENLRNPFGE VGSSFFNMNK IPVNCQPSVG SFTYSKLDTS  120
RPHLELKDMK EPLTQPSLNI TLGVPLGTPN FVVPCSGSAA QEDEKSILPY QQGQRSRPIF  180
PKLIKTGTTV NSEARKGMAP LVRIARPPAE GRGKNQLLPR YWPRITDQEL EQLSGDLNST  240
IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQSEGL PVRVQDVKGN EWTFQFRFWP  300
NNNSRMYVLE GVTPCIQSMQ LRAGDTVTFS RIDPGGQLVM GFRKATNSTD VQDAKIPTLS  360
NGSHPGDASF SRVFQNLPSR AGGDASLHKS ENFGGRSNDA SGQQPMLTME KKGARNIGSK  420
SKRLLMHSED ALELRLTWEE AQDLLRPPPS ANPTIVTIDD HEFEEYDEPP VFGKRTIFTA  480
RPTGEQKQWA QCDDCSKWRR LPVDVLLPPK WSCSDNVWDL SRCTCSAPEE ISTKEQENLL  540
RASKDFKKRK IGKSQKSIQE LEPSGLDALA SAAVLGDSIA DLQESGTTTR HPRHRPGCTC  600
IVCIQPPSGK GKHKSTCTCN VCLTVKRRFK TLMLRKKKRQ SEREVEPLLQ DRNPQLDETE  660
MSGTLKGTSL QTNYSENEGS QSRMKDEEAA SSSGQIDLNC HPDREDMELE GAGLSTISLV  720
EAASQPVDSY SKQIGVSSVT SEQQSSQPSS MESERRLSGE VYHGSGHEST SDGCREHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-722233522131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1625636KRRFKTLMLRKK
2625638KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457293.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X4
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S3C6F80.0A0A1S3C6F8_CUCME; B3 domain-containing protein Os07g0679700-like isoform X4
STRINGXP_008457289.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]