PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020206P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 564aa    MW: 61747.1 Da    PI: 5.3236
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020206P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.39.8e-1231915521374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+ Ll+cA+av++++l+la+alL++++ l+  ++ +m+++a yf++AL  r++r         pp++ +  +s +    +  f+e+sP+lkf+h
  MELO3C020206P1 191 LVHSLLACADAVDNNNLNLAEALLKHIRFLVEAQAGAMRKVAGYFAQALTYRIYR-------FYPPKPFDYLSSYTD-LLQMHFYETSPYLKFAH 277
                     689***************************************************9.......457777764333333.34446************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIle+v +++ +H++Df+++qG QWp+L+qa+a Rp+gpp + +Tgv +  ++ s++ l+e+g +La+fAe++g++fef+ + +++l+dl
  MELO3C020206P1 278 FTANQAILESVGSASSIHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGVRHTLEEnSTDGLQEVGAKLAQFAEKFGMKFEFRGFFCNNLADL 372
                     *****************************************************976668************************************ PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     e++ L+++  E++a++++++lhrll++s+++e+    vL ++k+l+Pk+++vveq a+hn++sF++rf+eal+yys+lfdsle +  ++ ee+++
  MELO3C020206P1 373 EPSILNLE-TETVAISSIFELHRLLAHSGAIEK----VLTTIKELNPKIITVVEQVANHNGPSFVDRFTEALHYYSSLFDSLEGS--PAGEEDVV 460
                     *****986.6***********************....**********************************************99..45567777 PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++e+lgr+i nvvaceg++r+erhet+++Wr+rl+++GF+ v+l+++a +qa++ll+  ++ ++gyrvee++gsl+lgW++rpL+++SaW+
  MELO3C020206P1 461 RSEEYLGRQIYNVVACEGSDRVERHETVAQWRSRLSSSGFEMVHLGSNAFNQASTLLAAlFGgGNGYRVEENNGSLTLGWHTRPLIATSAWT 552
                     77777*************************************************99975166899**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011295.3E-2930103No hitNo description
PfamPF120411.6E-323096IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098560.963165530IPR005202Transcription factor GRAS
PfamPF035143.4E-120191552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MKRDHTQQSS NPAAAGKPKK WAVEEEEDHD KHLAALGYNV RLSDMADVAL KLEQLEMVMG  60
LSEEDGISHL SSNTVHYNPS DVSSWVQSML VELNTPLQSQ GIIHDPVLAI AESTSFSVAA  120
AFTNDSEYDL RAIPGVAAFP QIDSSNPRKR FKKSDSESLL VTASSSTSSS SSSEPSRSVV  180
LVDSAETGVR LVHSLLACAD AVDNNNLNLA EALLKHIRFL VEAQAGAMRK VAGYFAQALT  240
YRIYRFYPPK PFDYLSSYTD LLQMHFYETS PYLKFAHFTA NQAILESVGS ASSIHVVDFN  300
LQQGHQWPPL IQAFALRPGG PPAFHLTGVR HTLEENSTDG LQEVGAKLAQ FAEKFGMKFE  360
FRGFFCNNLA DLEPSILNLE TETVAISSIF ELHRLLAHSG AIEKVLTTIK ELNPKIITVV  420
EQVANHNGPS FVDRFTEALH YYSSLFDSLE GSPAGEEDVV RSEEYLGRQI YNVVACEGSD  480
RVERHETVAQ WRSRLSSSGF EMVHLGSNAF NQASTLLAAL FGGGNGYRVE ENNGSLTLGW  540
HTRPLIATSA WTVAGGGEST RPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-641755522378Protein SCARECROW
5b3h_D4e-641755522378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818540.0LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457015.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1S3C4M20.0A0A1S3C4M2_CUCME; DELLA protein GAI-like
STRINGXP_008457015.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein