PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C020162P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 183aa MW: 19977.8 Da PI: 8.9092

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C020162P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	31.4	3.8e-10	157	177	2	22
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDg++WrKYGqKe+ gs+fpr MELO3C020162P1 157 DDGFTWRKYGQKEILGSRFPR 177 8*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.0E-8	152	177	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-7	153	177	IPR003657	WRKY domain
Pfam	PF03106	1.4E-6	157	177	IPR003657	WRKY domain
PROSITE profile	PS50811	9.328	157	177	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEEAISLILR GCSLARQLEF NVLNLGNNNI NMSDQSHFMA RSCDEILGVF SAAKDRLSSH 60 EPPPLTAVQG EVGLEEWLKS TCSQAMELAQ MQTRSPSPPS AIVTVPAAVK DSGKLMAMGF 120 SSSSSSSTKA RRRKDDMEKR TVRVGAPRIG NTELPPDDGF TWRKYGQKEI LGSRFPRLST 180 VF*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00304	DAP	Transfer from AT2G40740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681900	0.0	LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456967.1	1e-127	PREDICTED: WRKY transcription factor 55
TrEMBL	A0A1S3C4H9	1e-126	A0A1S3C4H9_CUCME; WRKY transcription factor 55
STRING	XP_008456967.1	1e-127	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8629	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	8e-23	WRKY DNA-binding protein 55