PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019845P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 554aa MW: 62171.8 Da PI: 4.3773 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3.1e-51 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdee+v +yL++kv+gk+l++ + i+ ++iyk+ePwdLp k k+k+++ ewyfFs+ dkky +++r+nrat++gyWk+tgkd++v MELO3C019845P2 9 LAPGFRFHPTDEEIVRYYLRRKVSGKSLRF-DPISVTEIYKSEPWDLPgKsKLKTRDLEWYFFSPLDKKYGNSSRTNRATEHGYWKTTGKDRPVR 102 579*************************99.89***************5347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv+++grap+g +++Wvmheyrl MELO3C019845P2 103 H-NSRVVGMKKTLVYHSGRAPRGARSNWVMHEYRL 136 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.226 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MGSDSSTSLA PGFRFHPTDE EIVRYYLRRK VSGKSLRFDP ISVTEIYKSE PWDLPGKSKL 60 KTRDLEWYFF SPLDKKYGNS SRTNRATEHG YWKTTGKDRP VRHNSRVVGM KKTLVYHSGR 120 APRGARSNWV MHEYRLTDED LEKAGVVQDA YVLCRIFQKS GSGPKNGEQY GAPFIEEEWE 180 DDEELTVPGE EVVANEGLVD VDDYMHFEVD DIAQYFDGEL PGEDVQRPLT YPQETINHVE 240 LPNVLVENDN KPEVCAGASS ELQPSLNFFQ LPEQYGRGES SEKDEHFAES SGNLAESSAN 300 FNQEDIDYLL DEPYPSVPDD LALIEELFLE TNDLSNPVES DPSALDVLEE YLTFFDADDN 360 LQLAFDPSDI FGSEEPISSQ TISEEKVNEV AEKEFMAAKQ SSVTFLNDAS TSKQNPKAIE 420 TDSKSPFFKR ASYMLGNIPA PPAFASEYPS KDMAIRLNSA AQTSSSVHVT AGMIHIRNLT 480 SNGDLVNNPL YGKNADVNLI LSFAQHQHQV ESDHQSEKNG IIVGSRGFLF FFLLFWVLIL 540 SVSFKVGSCI YSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-48 | 3 | 165 | 9 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681821 | 0.0 | LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016901999.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X3 | ||||
Swissprot | Q84K00 | 1e-156 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A1S4E197 | 0.0 | A0A1S4E197_CUCME; NAC domain-containing protein 78-like isoform X3 | ||||
STRING | XP_008456548.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-144 | NAC domain containing protein 2 |