PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C019663P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 315aa MW: 35983.1 Da PI: 7.2506

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C019663P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.6	2.5e-49	15	143	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeelv +yL++kv++k + + e ik++diyk++PwdLp + + +ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk++++ MELO3C019663P1 15 PGFRFHPTDEELVGFYLRRKVDKKVIGT-ELIKSIDIYKHNPWDLPnGSNNLGEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKAIYNGs 108 9**********************999.89***********445556999*********************************975 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLv+ykg+a +g+kt+W+mhe+rl MELO3C019663P1 109 qgSNIIIGLKKTLVYYKGNAGRGTKTEWMMHEFRL 143 444445*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-52	12	178	IPR003441	NAC domain
PROSITE profile	PS51005	52.149	13	178	IPR003441	NAC domain
Pfam	PF02365	2.4E-26	15	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MFAEPEIDDY QFPLPGFRFH PTDEELVGFY LRRKVDKKVI GTELIKSIDI YKHNPWDLPN 60 GSNNLGEKEW YFFCKRGRKY KNSIRPNRVT GSGFWKATGI DKAIYNGSQG SNIIIGLKKT 120 LVYYKGNAGR GTKTEWMMHE FRLPNPHTTT SSIFGRITTT SNKLQDAEIW TLCRIFKRSV 180 SSTKYAPNWR EIAGGNGGSI FGEMNNNNAN AYSEECYDNE SNYISFSSSL INFEEKKPII 240 NNDNNNNHNP LMMMMNFSSI SEEQEAPSSS TIEESSPSSY SNFDGDATDL FGYKDRNKLQ 300 LLNQDFSNFI HHHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	15	184	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	15	184	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	15	184	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	15	184	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-48	15	184	22	174	NAC domain-containing protein 19
3swm_B	9e-48	15	184	22	174	NAC domain-containing protein 19
3swm_C	9e-48	15	184	22	174	NAC domain-containing protein 19
3swm_D	9e-48	15	184	22	174	NAC domain-containing protein 19
3swp_A	9e-48	15	184	22	174	NAC domain-containing protein 19
3swp_B	9e-48	15	184	22	174	NAC domain-containing protein 19
3swp_C	9e-48	15	184	22	174	NAC domain-containing protein 19
3swp_D	9e-48	15	184	22	174	NAC domain-containing protein 19
4dul_A	1e-47	15	184	19	171	NAC domain-containing protein 19
4dul_B	1e-47	15	184	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456332.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-75	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1S3C489	0.0	A0A1S3C489_CUCME; transcription factor JUNGBRUNNEN 1-like
STRING	XP_008456332.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-80	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]