PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019390P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 383aa    MW: 41852.8 Da    PI: 7.2533
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019390P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.54.1e-071374655
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +ft++++ e+e+  +   n  p +e    LA+k            ++ +qV +WFqNrR+  
  MELO3C019390P1 13 RFTASEVAEMETILQGhnNTMPAREVLVALADKFsesverkgkiAVQMKQVWNWFQNRRYAI 74
                    69999999999999954499999*******************999**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-10476IPR009057Homeodomain-like
SMARTSM003890.0029781IPR001356Homeobox domain
PfamPF000461.3E-41374IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-71380IPR009057Homeodomain-like
CDDcd000860.001231375No hitNo description
PROSITE profilePS500719.5391377IPR001356Homeobox domain
PfamPF167198.1E-41126251IPR032001SAWADEE domain
CDDcd000240.00765138182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTASEVA EMETILQGHN NTMPAREVLV ALADKFSESV ERKGKIAVQM  60
KQVWNWFQNR RYAIRAKTSK APGKLAVSPV VQIESTPVRN VPQTVVVPAP TPVGTAKSAP  120
ENPLSEFEAK SGRDGAWYDV ATFLSHRSVE SGDPEVLVRF SGFGSEEDEW VNIRRNIRPR  180
SLPCESSECV AVLPGDLILC FQEGKEQALY FDAHVLDTQR RRHDVRGCRC RFLVRYDHDQ  240
SEEIVQLRKI CRRPETDYRL QQLHAVNEAA SIEPSKSGMD SVLLSGQRIN FETPQNPLSK  300
DAALVIPNAN PHINAHAQTS TQEARNTETN TAPITFSSGN HNAPTTFNSA NLAGSSAFSS  360
GIVTNTVSGG SADNVSDGKL LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-461272556134SHH1 SAWADEE
4iur_B3e-461272556134SHH1 SAWADEE
4iut_A3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-461272556134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456010.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-136SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S3C2740.0A0A1S3C274_CUCME; protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
STRINGXP_008456010.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-121sequence-specific DNA binding transcription factors;sequence-specific DNA binding