PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C019379P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 229aa MW: 25034 Da PI: 8.5636

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C019379P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	7.9e-39	34	93	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k+++l+cprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGg++rknk+ MELO3C019379P1 34 KDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRP 93 6899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	35	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	35	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDSAHWPQVE VKNMDLEEEE GIKAVVERKA KARKDQILNC PRCNSNNTKF CYYNNYSLSQ 60 PRYFCKSCRR YWTAGGSLRN IPVGGASRKN KRPSANFSLP PSKNNQKNYN NGGGGDDDQG 120 ISQLNINITS CSSTATTTNT AATCCWLSSD NDHMNNQIML RSNGIMSQRE LIPFIPMPAP 180 APPQPTAVSV AALEDFKQLS TIISTDQNGA KLGDAPAFWN GIFGGGSW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	34	RKAKARKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681851	0.0	LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455989.1	1e-171	PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBL	A0A1S3C3F2	1e-170	A0A1S3C3F2_CUCME; dof zinc finger protein DOF1.8-like
STRING	XP_008455989.1	1e-171	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24484	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-33	Dof family protein