PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018898P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 32082.5 Da PI: 6.2356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 36 | 74 | 2 | 44 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r +h+e E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L MELO3C018898P3 36 RSKHSETEQRRRSKINERFQILRELIPQN----DQKRDKASFL 74 899*************************9....8999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-11 | 32 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 34 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.036 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-10 | 36 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.16E-10 | 36 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MVKTSKSIHE HFEDDANESG VKIEGKSGES KASGHRSKHS ETEQRRRSKI NERFQILREL 60 IPQNDQKRDK ASFLLEKNYR AADSYTDHSQ VVKRGPNHES AIVFSQAMLT NAPNVMDADL 120 GPAALLNAVD HTLVSATQGL PMSMHTQPIV FDLVGRSSLS TESLDEPVSG SENVSSKTQA 180 ELLPGRTCTT TGFLNHAVSD QDDLTPESEL ESISGAYSHG LLSTLTQALQ ASGVDLSQTN 240 ISVKVDVGKR ANRAISLSED DKKQSLNNQL MGQSIHGCFS EESEQTHKKL RTGV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681870 | 0.0 | LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455559.1 | 0.0 | PREDICTED: transcription factor BIM2 isoform X3 | ||||
TrEMBL | A0A1S3C1W9 | 0.0 | A0A1S3C1W9_CUCME; transcription factor BIM2 isoform X3 | ||||
STRING | XP_008455559.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 9e-36 | BES1-interacting Myc-like protein 2 |