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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018809P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 720aa MW: 78602.6 Da PI: 6.0971 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 43 | 98 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k MELO3C018809P1 43 KKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMK 98 688999***********************************************999 PP | |||||||
2 | START | 222.8 | 1e-69 | 236 | 456 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++elv++a+ +ep+W++ + ++n++e++++f+++ + +s ea+ra++vv+m++ lve l+d++ qW++ ++ +a+tl MELO3C018809P1 236 ELAVAAMEELVRMAQMGEPLWMTGVdgstNELNEEEYVRSFPRGIGpkpsgFSCEASRATAVVIMNHISLVEMLMDVN-QWSTIFTgivsRAMTL 329 57899********************999999************999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m++elq++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p R++++pSg+li++++ng+skvtwvehv MELO3C018809P1 330 EVLSTGvagnynGALQVMTSELQVPSPLVPtRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPA----LRCRRRPSGCLIQEMPNGYSKVTWVEHV 420 ************************************************************995....**************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+l+++lv+sg+a+gak+w atl+rqce+ MELO3C018809P1 421 EVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCER 456 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 21 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.01E-19 | 26 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.536 | 40 | 100 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-18 | 41 | 104 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-17 | 43 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.12E-19 | 43 | 101 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 75 | 98 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.676 | 227 | 459 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-34 | 229 | 458 | No hit | No description |
CDD | cd08875 | 2.23E-129 | 231 | 455 | No hit | No description |
SMART | SM00234 | 4.7E-65 | 236 | 456 | IPR002913 | START domain |
Pfam | PF01852 | 2.8E-59 | 237 | 456 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-5 | 289 | 438 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.1E-23 | 476 | 711 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MGENEYGRMR ETEEFESGTK SSSENHEVGS GDDQLNNQRP NKKKRYHRHT QHQIQQMEAF 60 FKECPHPDDK QRKELSRELN LEPLQVKFWF QNKRTQMKTH HERHENTQLR TENEKLRADN 120 MRYREALSNA TCPNCGGPTA IGEMSFDEHH LRLENARLRE EIDRISAIAA KYVGKPVSNY 180 PLLSTPIPSR PLEIGMGSYG GHDLGLGPGG GDMFGAADLL RTISAPSEAD KPVIIELAVA 240 AMEELVRMAQ MGEPLWMTGV DGSTNELNEE EYVRSFPRGI GPKPSGFSCE ASRATAVVIM 300 NHISLVEMLM DVNQWSTIFT GIVSRAMTLE VLSTGVAGNY NGALQVMTSE LQVPSPLVPT 360 RESYFVRYCK QHGEGTWAVV DVSLDNLRPA PALRCRRRPS GCLIQEMPNG YSKVTWVEHV 420 EVDDRGVHSL YNQLVSSGHA FGAKRWIATL DRQCERLASA MATSIIPNGD AGVITNQEGR 480 KSMLKLAERM VMSFCGGVSA STTHTWTTLS GTGADDVRVM TRKSVDDPGR PSGIVLSAAT 540 SFWLPLPPNR VFHFLRDENS RNEWDILSNG GVVQEMAHIA NGRDTGNCVS LLRVNSANSS 600 QSNMLILQES STDQTASFVI YAPVDIVSIN VVLNGGDPDY VALLPSGFAI LPDGSTASSG 660 GANGAGEHGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN NLIACTVERI KASLSCDNP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455423.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A1S3C111 | 0.0 | A0A1S3C111_CUCME; homeobox-leucine zipper protein HDG2 | ||||
STRING | XP_008455423.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |