PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018516P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 338aa    MW: 38085.3 Da    PI: 4.6411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018516P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-102582981055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  MELO3C018516P1 258 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 298
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-14248313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12253307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-11257302No hitNo description
PfamPF000101.0E-7258298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEQLNGSFIA NHEEEDHEEE EEATFMAQLL FNTKANSPPD PFMATLSYDQ TPSSSTFYSL  60
SQESSDELLF PTNENNNNHH HHYYYCNPMN NNNDNSSNYF SLGELGNYYN NNNGSNFHLQ  120
VPEDSMNVEV SENNSLQPCF EEADQLIKLP EEEAAHYQTE INCKKRSRGE FGDHHVQKGR  180
NERGKKTQKL TSSTNTEEDG NGGLSRQSTS TYCSEDESNA SLDRNGGANY NSGSSLNGPN  240
KSRASRGSAT DPQSLYARKR RERINERLRI LQNLVPNGTK VDISTMLEEA VQYVKFLQLQ  300
IKLLSSDDLW MYAPIAYNGM DIGLNPTTPK TAKEKEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455031.10.0PREDICTED: transcription factor bHLH54
TrEMBLA0A1S3C1610.0A0A1S3C161_CUCME; transcription factor bHLH54
STRINGXP_008455031.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-48ROOT HAIR DEFECTIVE 6-LIKE 2