PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C018443P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 323aa MW: 36673.9 Da PI: 9.4978

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C018443P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.1	5.7e-17	128	217	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h + +e+ ltl de+ ++++ k+ +k++ l++GW++F +++L +gD +vF+l++ +ef +v MELO3C018443P2 128 FVKPMLQSHVSGGFWLGLPVRFCKTHL-P-HEDEILTLVDEDENEFQTKYLADKTG----LSGGWRGFSIDHQLVDGDALVFQLTSPTEF--KVY 214 89********************994.2.34558***********666666....*********************9765555..998 PP EE- CS B3 96 vfr 98 ++r MELO3C018443P2 215 IIR 217 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-21	119	217	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-24	121	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.34E-26	126	217	No hit	No description
PROSITE profile	PS50863	11.702	128	219	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.4E-15	128	217	IPR003340	B3 DNA binding domain
SMART	SM01019	7.8E-20	128	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MVESNLTYEE CRRQRLEENK KRMEELNLNK LADAFKSSSP KSSPTKQLKR PRQPFDVSSF 60 SVRRSSRFAD KPPMNYKEVP IEPLPGIRRS YQRRDLLNRI YASDEERQYA IDRALDLQSS 120 LESKYPSFVK PMLQSHVSGG FWLGLPVRFC KTHLPHEDEI LTLVDEDENE FQTKYLADKT 180 GLSGGWRGFS IDHQLVDGDA LVFQLTSPTE FKVYIIRTYN SVDKEDTKEG SDATQLESSG 240 KKNTKSSGHK TRANNSEDKG DIDEDSDVFQ LEKGGKKTTR SSRCKRSANK SEDKSDTGTD 300 SHDPQLGKTG KRITRSSSKG KK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008454939.1	0.0	PREDICTED: B3 domain-containing protein At3g19184-like isoform X1
Swissprot	Q1G3M3	4e-85	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1S3BZ91	0.0	A0A1S3BZ91_CUCME; B3 domain-containing protein At3g19184-like isoform X1
STRING	XP_008454939.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-82	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]