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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018443P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 321aa MW: 36557.7 Da PI: 9.504 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.6e-17 | 128 | 217 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h + +e+ ltl de+ ++++ k+ +k++ l++GW++F +++L +gD +vF+l++ +ef +v MELO3C018443P1 128 FVKPMLQSHVSGGFWLGLPVRFCKTHL-P-HEDEILTLVDEDENEFQTKYLADKTG----LSGGWRGFSIDHQLVDGDALVFQLTSPTEF--KVY 214 89**********************994.2.34558***************666666....***********************9765555..998 PP EE- CS B3 96 vfr 98 ++r MELO3C018443P1 215 IIR 217 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 119 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-24 | 121 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.35E-26 | 126 | 217 | No hit | No description |
PROSITE profile | PS50863 | 11.702 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-15 | 128 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-20 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MVESNLTYEE CRRQRLEENK KRMEELNLNK LADAFKSSSP KSSPTKQLKR PRQPFDVSSF 60 SVRRSSRFAD KPPMNYKEVP IEPLPGIRRS YQRRDLLNRI YASDEERQYA IDRALDLQSS 120 LESKYPSFVK PMLQSHVSGG FWLGLPVRFC KTHLPHEDEI LTLVDEDENE FQTKYLADKT 180 GLSGGWRGFS IDHQLVDGDA LVFQLTSPTE FKVYIIRTYN SVDKEDTKEG SDATQLESSG 240 KKNTKSSGHK TRANNSEDKG DIDEDSDVFQ LEKGGKKTTR SSRCKRSANK SEDKSDTGTD 300 SHDPQLGKTG KRITRSSRKK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 1e-178 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 1e-178 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008454940.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g19184-like isoform X2 | ||||
Swissprot | Q1G3M3 | 4e-85 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A1S3BZT9 | 0.0 | A0A1S3BZT9_CUCME; B3 domain-containing protein At3g19184-like isoform X2 | ||||
STRING | XP_008454939.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 6e-82 | B3 family protein |
Publications ? help Back to Top | |||
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