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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018430P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 279aa MW: 31377.4 Da PI: 7.4453 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 30.6 | 7.3e-10 | 236 | 260 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rF +a++qLGGs+ MELO3C018430P1 236 KQRRCWSPELHRRFENALQQLGGSQ 260 79*********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 235 | 260 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MPSLSPPNTI SHFLHQISSL SNPSDRASTL HSLITNLEDE MKKIDAFKRE LPLCMLLLND 60 AILALKDTSL QCASSCSSPK RKPVLEEFMS LNKDSSDENE KEEDCRDKKE WMSSVQLWKT 120 DDLQNTQIKT KRNEGWGYVA AAEDRIHRKK NEEGLFVGFK PSSSAFPALA AVKKEEKIES 180 PICALSLVTP NLKTTREESV SCVLRSSGNR ATSTSAADIQ SNLRTALPPQ QQPARKQRRC 240 WSPELHRRFE NALQQLGGSQ GENYTWDHEK DFSCFLHV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00193 | DAP | Transfer from AT1G49560 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008454913.1 | 0.0 | PREDICTED: uncharacterized protein LOC103495215 | ||||
TrEMBL | A0A1S3BZ76 | 0.0 | A0A1S3BZ76_CUCME; uncharacterized protein LOC103495215 | ||||
STRING | XP_008454913.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 7e-22 | G2-like family protein |