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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018249P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 575aa MW: 64597 Da PI: 9.4434 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 8.6e-17 | 23 | 108 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s++l s rl +p kf+++ +++ ++ ++l +sg++W v+l + + ++ +GW F++++ L+ gDf+vF++d+ e +++v+vf++ MELO3C018249P1 23 SSTLCSERLKVPLKFVKHLEEI--IGRSVVLIGPSGQTWLVNL--IQENDNLFFCEGWPTFARDHALECGDFLVFRYDS--ELNFNVRVFDQ 108 7788899*********666766..6678***************..56666688888********************976..55569*99997 PP | |||||||
2 | B3 | 47.7 | 2.8e-15 | 232 | 313 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l +p kf +h + ++ +l+l +++g+sW+v+ ++ +++l +GW Fv+ n+++ gD++vF+l+++ e +v++fr MELO3C018249P1 232 YTLNIPYKFSMAHL--PSCKLKLVLHNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRGNDINMGDICVFELVRDCEL--RVHIFR 313 5689*****98885..458889**************954566666799************************996655..999998 PP | |||||||
3 | B3 | 48.1 | 2.1e-15 | 455 | 543 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++ +++ s l +p +f ++h + + ++++l+ ++g W v+ + ++ ++++ +GW +Fv++ng++ gD+++F+l+g+ e +v+v MELO3C018249P1 455 MKKFNTSGSYTLKIPHQFSSAHFPN--SRTEIVLRGPNGGCWIVNSVPdSMGRMMHTFCGGWMSFVRDNGIQMGDICIFELVGKCEL--FVHV 543 5455556667799*********744..5679***************6545555559999**********************995443..6665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-21 | 12 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-22 | 15 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.508 | 16 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-12 | 18 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 23 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.77E-18 | 23 | 107 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-22 | 210 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-23 | 212 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-18 | 217 | 313 | No hit | No description |
PROSITE profile | PS50863 | 13.239 | 219 | 315 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-13 | 219 | 315 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-12 | 231 | 313 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-22 | 446 | 545 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-23 | 447 | 545 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-19 | 449 | 543 | No hit | No description |
PROSITE profile | PS50863 | 13.338 | 451 | 547 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-13 | 451 | 543 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-13 | 451 | 547 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MSDTESRREM VAARRPSFYT FYSSTLCSER LKVPLKFVKH LEEIIGRSVV LIGPSGQTWL 60 VNLIQENDNL FFCEGWPTFA RDHALECGDF LVFRYDSELN FNVRVFDQSA CEKEGAFHSQ 120 CRQDKTGHKR DREEDHSSRE TCEEDVTKKT RTISDVNSDC SRENLPSIRA VEDHKSVAGQ 180 NGISKVVDIT THDKIPALPL SFQDEKKVSQ SFSSDFPYFV RIMKSFNIRG SYTLNIPYKF 240 SMAHLPSCKL KLVLHNLKGE SWTVNSVPTT RVHTSHTLCG GWMAFVRGND INMGDICVFE 300 LVRDCELRVH IFRVGKEISE DQSGNGSFNR LGAGHAVIPR KALKGLPKKM NGNSHKVHSK 360 RSKRIEVLDK KCLKSWQEPF CNDAKKHSSA KKVSTKVMVC SPSKKPSKRL VNRRTSVKGD 420 LILPARPGLR AMLARDEERA AKSFVSCFPS FVRIMKKFNT SGSYTLKIPH QFSSAHFPNS 480 RTEIVLRGPN GGCWIVNSVP DSMGRMMHTF CGGWMSFVRD NGIQMGDICI FELVGKCELF 540 VHVTGAGKKG FESSEATTCS ELAIVPTTSN HPSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681826 | 0.0 | LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016901608.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A1S4E051 | 0.0 | A0A1S4E051_CUCME; B3 domain-containing protein Os01g0723500-like | ||||
STRING | XP_008454672.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-19 | B3 family protein |