PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018237P1
Common NameJA
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 319aa    MW: 35712.3 Da    PI: 9.2678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018237P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.5e-53171451128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++
  MELO3C018237P1  17 LPPGFRFHPTDEELVVHYLKKKATSLPLPV-AIIAEVDLYKYDPWELPAKASYGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIAS 110
                     79****************************.88***************9888999*************************************998 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  MELO3C018237P1 111 seGNRKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 145
                     778889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6413184IPR003441NAC domain
PROSITE profilePS5100561.74517183IPR003441NAC domain
PfamPF023655.7E-2818145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MENPKSALET DSERPNLPPG FRFHPTDEEL VVHYLKKKAT SLPLPVAIIA EVDLYKYDPW  60
ELPAKASYGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVIAS SEGNRKVGVK  120
KALVFYGGKP PKGIKTNWIM HEYRLADNKS GGGNNNKPPG FIIGGKKNSL RLDDWVLCRI  180
YKKNNSNKPG TDYEREDCFD SMVGSIPSSI QINNYNQSMT TTTTATNFSM YSELASLSLP  240
MKRLLQPPSW EEEEYRLADN RSSRKRLQLM NGGGGGDNSI AALLSQLPSL QQPTLQGCIV  300
GDEIFRPAFQ LPETNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-711618616168NO APICAL MERISTEM PROTEIN
1ut4_B3e-711618616168NO APICAL MERISTEM PROTEIN
1ut7_A3e-711618616168NO APICAL MERISTEM PROTEIN
1ut7_B3e-711618616168NO APICAL MERISTEM PROTEIN
3ulx_A2e-7191866171Stress-induced transcription factor NAC1
4dul_A3e-711618616168NAC domain-containing protein 19
4dul_B3e-711618616168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2135570.0EF213557.1 Cucumis melo NAC transcription factor (JA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001284435.10.0NAC domain-containing protein 18-like
SwissprotQ9LD441e-105NAC56_ARATH; NAC transcription factor 56
TrEMBLB3SGL40.0B3SGL4_CUCME; NAC domain-containing protein 18-like
STRINGXP_008454665.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2488033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-95NAC domain containing protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]