PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017826P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 227aa    MW: 24900.1 Da    PI: 5.0054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017826P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-193584255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +gr++AeIrdps+   + r++lg+f+tae+Aa a+++a+++++g
  MELO3C017826P1 35 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRAARSMRG 84
                    678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-303491No hitNo description
SMARTSM003801.0E-343598IPR001471AP2/ERF domain
PROSITE profilePS5103220.5343592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-293692IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-213693IPR016177DNA-binding domain
PRINTSPR003674.7E-83647IPR001471AP2/ERF domain
PfamPF008472.2E-113684IPR001471AP2/ERF domain
PRINTSPR003674.7E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDFKSSKTNS PSSSSKPRKS KQQDHQQPLP QEPTRFLGVR RRPWGRYAAE IRDPSTKERH  60
WLGTFDTAED AALAYDRAAR SMRGSKARTN FVYSDMPHGS SVTSIISPDE SQLYPPTPTS  120
QPNHLCFDPF TTSSFPGNDW LPDSDSYQPV TAFMDNGITH DDAELPPLPP DASSSYNDCA  180
AAMVDWSTAS SSSSFMGFNS NAVFPPFPDT SSDGSFGFGS SSTYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-203691359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-203691662ATERF1
3gcc_A7e-203691662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454160.11e-165PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9FZ901e-45ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A1S3BXG11e-163A0A1S3BXG1_CUCME; ethylene-responsive transcription factor LEP-like
STRINGXP_008454160.11e-164(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]