PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017761P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 151aa MW: 16723.3 Da PI: 7.967 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6e-06 | 38 | 77 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ +++ L++l+ + +K + a++L +A+eYI+ L MELO3C017761P1 38 KERKDKLGERIMALQQLVSPY-----GKTDTASVLLEAMEYIQFL 77 77999999**********999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-10 | 27 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.693 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-12 | 30 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-4 | 36 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.98E-6 | 38 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEVETMMEQK RSLCSVDESA LTSLTPKRHK TDFSISSKER KDKLGERIMA LQQLVSPYGK 60 TDTASVLLEA MEYIQFLHEQ VKVLSAPYLQ STPTVLLQEV EPCSHSLRSR GLCLVPISCT 120 AGVARSNGAD IWAPVKTISP KFEKHISPFN * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 3e-84 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 3e-84 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008454045.1 | 1e-108 | PREDICTED: transcription factor bHLH113-like isoform X2 | ||||
Swissprot | Q7XJU2 | 3e-63 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A1S3BYX6 | 1e-107 | A0A1S3BYX6_CUCME; transcription factor bHLH113-like isoform X2 | ||||
STRING | XP_008454043.1 | 1e-107 | (Cucumis melo) | ||||
STRING | XP_004152130.1 | 1e-107 | (Cucumis sativus) | ||||
STRING | XP_004156961.1 | 1e-107 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 1e-65 | bHLH family protein |
Publications ? help Back to Top | |||
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