PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017619P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 317aa    MW: 36763.4 Da    PI: 10.019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017619P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.5e-14225311997
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      + k++  ++p +f +++ g + e ++++  +++  +We++++  + k+    ++ GW+ F+k+ +L++gD+vvF+l++r +++ ++++vf
  MELO3C017619P1 225 RNIKKRYAYIPSSFGKKYLGREDEIIEIQGSSSKRGRWEIQCKGwWAKR----MGVGWSVFCKESNLRVGDVVVFELVKRsKNRVMKFTVF 311
                     566777789*********66767778888888888*******6536666....788**********************9978888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.689177IPR003340B3 DNA binding domain
SMARTSM010190.18177IPR003340B3 DNA binding domain
CDDcd100177.09E-8175No hitNo description
SuperFamilySSF1019361.41E-13276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-13276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-16210308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-15211308IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.898217314IPR003340B3 DNA binding domain
SMARTSM010192.2E-7218314IPR003340B3 DNA binding domain
PfamPF023621.3E-11225311IPR003340B3 DNA binding domain
CDDcd100177.30E-9233312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MPSKLIKMLG KELSSNVFLT VPNGGVWEVG LEKSNGKIWF NDNWNKFIDY YSIDYGFLLL  60
FKYEGNSSFH VLIFDTTTFE IQYPHHDGMK LGNEVEKSDS VISISSSRDC SDRFDDDDDE  120
CRYELHTTKR ARTNLGFNLM KSPSVEAQCK SKIKLESCDR EFKSKRCKVE DCIAVEDIDV  180
VKNHRRRKLA SKTRSSRGWQ KAIRRAKKMM IKTKNPSFML IIEERNIKKR YAYIPSSFGK  240
KYLGREDEII EIQGSSSKRG RWEIQCKGWW AKRMGVGWSV FCKESNLRVG DVVVFELVKR  300
SKNRVMKFTV FPSVAV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453826.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S3BY010.0A0A1S3BY01_CUCME; B3 domain-containing transcription factor VRN1-like
STRINGXP_008453826.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-34B3 family protein