PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017548P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 534aa    MW: 59429.3 Da    PI: 6.3087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017548P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.82.2e-901715323374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     e L+++A++++s+d++la+ +L+rl+++  ++++ +p++R+a++f+eAL++ l+  +++  + l++++    + +++++a+k+fs +sPi+ fsh
  MELO3C017548P1 171 EDLVAAADCFDSNDFQLAHVILERLNQRlqSTSSTNPLHRAAFFFKEALQSLLSP-SPNRHNRLSSWP----DIVHTIKAYKAFSVISPIPMFSH 260
                     689************************98666666*******************9.444444455444....58********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +t+Nqa+lea+++++ +HiiDfdi+ G+Q++++++++ +++e+    pp lRiT+++++e   + e + ++e+L +fA+ l+++f+++++  +++
  MELO3C017548P1 261 FTTNQALLEALNSSSIIHIIDFDIGFGGQYASFMKEIVEKAESrnvvPPVLRITAIVPEE--FAIESRLIRENLCQFAQDLKIRFHIDLVPLRTF 353
                     *************************************9888544555***********66..8889999********************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpres 279
                     ++l++++ ++ +gE+ a+ l+  +++ l   +s++s   ++L  v+++sP vvv+v+ +  +d +++sF + ++++le+y+ +++sl+a  ++  
  MELO3C017548P1 354 QTLSFKSVKFMEGEKSAILLSPTIFSRL---GSINS-VASFLADVRRVSPCVVVFVDGDgwSDSGATSFKRNLMDSLEFYALMLESLDAA-GASC 443
                     *************************999...56665.667*******************77788999********************998.6777 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+ + +E ++++++i  +v  +g++       +  Wre ++ aG+kpv+ls++a  qa++ll kv+++g+++ +++++lvl+W++rpLv++SaWr
  MELO3C017548P1 444 EWVRRIETFVVRPKILAAVEGAGRM------AAPPWREVFHGAGMKPVALSQFADFQAECLLGKVQVRGFQIGKRNAELVLCWHERPLVATSAWR 532
                     9******************999998......799************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.062143512IPR005202Transcription factor GRAS
PfamPF035147.6E-88171532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MRVPVSNNQL SLPSSTPNPN PKLHSSPSTI AFHTPTTIST AATTCYEPTS VLDLRRSPSP  60
VAPDNPLSSS DDRHNNHPLD WDEQALHNLD WDSIMGDLGL HDDSNSSLKN NTNHDHVPHF  120
PEFLHSQSLD QTSHLLPPDF FLSEPFSNHS PTILQSFNSF NPNNPSLDFL EDLVAAADCF  180
DSNDFQLAHV ILERLNQRLQ STSSTNPLHR AAFFFKEALQ SLLSPSPNRH NRLSSWPDIV  240
HTIKAYKAFS VISPIPMFSH FTTNQALLEA LNSSSIIHII DFDIGFGGQY ASFMKEIVEK  300
AESRNVVPPV LRITAIVPEE FAIESRLIRE NLCQFAQDLK IRFHIDLVPL RTFQTLSFKS  360
VKFMEGEKSA ILLSPTIFSR LGSINSVASF LADVRRVSPC VVVFVDGDGW SDSGATSFKR  420
NLMDSLEFYA LMLESLDAAG ASCEWVRRIE TFVVRPKILA AVEGAGRMAA PPWREVFHGA  480
GMKPVALSQF ADFQAECLLG KVQVRGFQIG KRNAELVLCW HERPLVATSA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2417753127378Protein SCARECROW
5b3h_A2e-2417753126377Protein SCARECROW
5b3h_D2e-2417753126377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453725.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-148SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3BWY30.0A0A1S3BWY3_CUCME; scarecrow-like protein 15
STRINGXP_008453725.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-126GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]