PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017547P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 512aa    MW: 57138.8 Da    PI: 6.3907
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017547P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.91.3e-911475083374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     e L+++A++++s+d++la+ +L+rl+++  ++++++p++R+a++++eAL++ l+  +++ y+    + +s+++ +++++a+k+fs +sPil fsh
  MELO3C017547P1 147 EDLVAAADCFDSNDFQLAHVILERLNQRlqSTSSAKPIHRAAFFIKEALQSLLSP-STNRYN----RLSSWSDIVHTIKAYKAFSSISPILMFSH 236
                     689************************98677777*******************9.333444....45555568********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +t+Nqa+lea++ ++ +HiiDfdi+ G+Q+++++++La+++e+    pp lRiT+v ++e   + e + ++e+L +fA+ l+++f+++++  +++
  MELO3C017547P1 237 FTTNQALLEALNASSFIHIIDFDIGFGGQYASFMKELAEKAESkniaPPVLRITAVMPEE--LAIESRLIRENLFQFAQDLKIRFHIDLVPLRTF 329
                     **************************************9994445559**********66..8899999********************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpres 279
                     ++l++++ ++ +gE++a+ l  +++r l  sv++     ++L  ++++sP vvv+v+ e  +d +++sF + +++ le+y+++++sl+a+ +   
  MELO3C017547P1 330 QTLSFKSVKFMEGEKVAILLTPSIFRRLG-SVNV---VASFLTDIQQVSPCVVVFVDGEgwSDSGGASFKKNLVKNLEFYATMLESLDAT-GVSG 419
                     ***************************93.3333...447*******************7778899*********************888.5677 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+ + +E ++l+++i   v   g +       +  Wre ++ aG++pv+ls++a  qa++ll kv+++g++v  ++++lvl+W++rpLv++SaWr
  MELO3C017547P1 420 EWVRRIETFVLRPKIFATVEGGGGM------AAPPWREVFDGAGMRPVALSQFADFQAECLLGKVQVRGFQVGRRHAELVLCWHERPLVATSAWR 508
                     9999*****************9998......899************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.273119488IPR005202Transcription factor GRAS
PfamPF035144.4E-89147508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MRVPVPNHQS SSLSSSTPKL HSEPTSVLDL HRTPSPVAPD NPLSSAHDRH NNHPLDWDEQ  60
ALHNLDWDSI MGDLGLHDDS NSSLKNNTSH DHVPNFPEFL HSQSLDQTSH LLPPDFFISE  120
PFSNHPPTIL QSFNSFNSNN PSLDFLEDLV AAADCFDSND FQLAHVILER LNQRLQSTSS  180
AKPIHRAAFF IKEALQSLLS PSTNRYNRLS SWSDIVHTIK AYKAFSSISP ILMFSHFTTN  240
QALLEALNAS SFIHIIDFDI GFGGQYASFM KELAEKAESK NIAPPVLRIT AVMPEELAIE  300
SRLIRENLFQ FAQDLKIRFH IDLVPLRTFQ TLSFKSVKFM EGEKVAILLT PSIFRRLGSV  360
NVVASFLTDI QQVSPCVVVF VDGEGWSDSG GASFKKNLVK NLEFYATMLE SLDATGVSGE  420
WVRRIETFVL RPKIFATVEG GGGMAAPPWR EVFDGAGMRP VALSQFADFQ AECLLGKVQV  480
RGFQVGRRHA ELVLCWHERP LVATSAWRFK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-2415250726378Protein SCARECROW
5b3h_A7e-2415250725377Protein SCARECROW
5b3h_D7e-2415250725377Protein SCARECROW
5hyz_A7e-2417450830375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453726.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-148SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3BXR20.0A0A1S3BXR2_CUCME; scarecrow-like protein 15
STRINGXP_008453726.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-134GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]