PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB

Protein Properties

Length: 339aa MW: 38378.2 Da PI: 8.7769

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C017170P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl MELO3C017170P1 15 KGPWTPEEDIILVSYIHQHGPGNWRSVPNNTGLLRCSKSCRLRWTNYL 62 79****************************99**********97 PP
2	Myb_DNA-binding	45.4	1.8e-14	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l MELO3C017170P1 68 RGDFSDDEENVIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113 899*****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.348	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-28	14	109	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-14	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-22	16	69	IPR009057	Homeodomain-like
CDD	cd00167	5.48E-11	17	62	No hit	No description
SMART	SM00717	8.3E-14	67	115	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.017	67	117	IPR017930	Myb domain
Pfam	PF00249	4.1E-13	68	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-23	70	118	IPR009057	Homeodomain-like
CDD	cd00167	4.84E-9	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGRPPCCSQT IVVKKGPWTP EEDIILVSYI HQHGPGNWRS VPNNTGLLRC SKSCRLRWTN 60 YLRPGIKRGD FSDDEENVIV HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKKKLKLG 120 FDDQSSQSPP PPHHHHDLQK NGNFSKGQWE RRLQTDIQTA KQALREALSL TTKQNFIQNN 180 NNNSKLLFLS SPTPNKNNNK QFHVSSSSSS SPSSSSSSSS SSSTYVSNAE NIAELLKNWT 240 KNSPNKAMAR SRNSESSSSC QNNNNNCSNL WVEEEISYYS NNNNNNVQDG GVPFNLLEKW 300 LFDEAAPTLQ HHPQYHPQHQ DDHFLHLSLQ DSQAPFFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-24	15	117	27	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453202.1	0.0	PREDICTED: myb-related protein 306-like
Swissprot	P81392	9e-93	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A1S3BVP0	0.0	A0A1S3BVP0_CUCME; myb-related protein 306-like
STRING	XP_008453202.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1016	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	4e-85	myb domain protein 96

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]