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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017168P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 410aa MW: 43993.1 Da PI: 7.718 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131 | 1.1e-40 | 80 | 174 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s +++ +s+ MELO3C017168P1 80 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPSQLRSSS 174 789******************************************************************99987777777777666663333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-41 | 84 | 255 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.923 | 86 | 140 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEGGDELHHH HHHHHQNHHH QQHHQHRPTF PFQLLEKKDE DAASCSTSPY PSLAISADTA 60 TTTPTTNSSV VAAETSKKPP PKRTSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK 120 SDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSSMSVPSQL RSSSYYNPNF 180 SLHQQRRTLF PGFGLSSETS STAALLNFQS TNIGNSLLQA KPEIRDTPSS LDLSDAAEEI 240 SIGRKRRPST EQELSSSSSQ HQMGGYLLQS STGTIPASHG GAQVPANFWM LTNTNNQVMG 300 GDPIWTFPSV NNSGLYRGTM SSGLHFMNFP APVALVPGQQ FGSSTGGGSN NNNNNNNSSS 360 TEGHLNILAG LNPYRSVSNT GVMEPQGSGS QSHHGGGGDD RHDTTSHQS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453196.1 | 0.0 | PREDICTED: transcription factor TCP14 | ||||
TrEMBL | A0A1S3BVN4 | 0.0 | A0A1S3BVN4_CUCME; transcription factor TCP14 | ||||
STRING | XP_008453196.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2120 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 4e-53 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |