PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016850P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 367aa    MW: 42224.3 Da    PI: 6.3984
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016850P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-092933282055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  MELO3C016850P1 293 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 328
                     4679*****************************885 PP
2ELK37.93.8e-13248269122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++LlrKYsgyL+sLkqE+s
  MELO3C016850P1 248 ELKNHLLRKYSGYLSSLKQELS 269
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.8E-21104148IPR005540KNOX1
PfamPF037903.4E-21105147IPR005540KNOX1
SMARTSM012561.8E-28155206IPR005541KNOX2
PfamPF037911.2E-24160205IPR005541KNOX2
SMARTSM011881100164184IPR005539ELK domain
PfamPF037892.6E-10248269IPR005539ELK domain
PROSITE profilePS5121311.296248268IPR005539ELK domain
SMARTSM011883.5E-7248269IPR005539ELK domain
PROSITE profilePS5007113.038268331IPR001356Homeobox domain
SuperFamilySSF466893.81E-20269344IPR009057Homeodomain-like
SMARTSM003896.6E-13270335IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27273334IPR009057Homeodomain-like
CDDcd000861.43E-11280332No hitNo description
PfamPF059201.4E-16288327IPR008422Homeobox KN domain
PROSITE patternPS000270306329IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEYNNDVNE NSNGRGNFLY GSGNSSSSNF GRSTAEMNVN NFHLQQGADC FQTPHHQSIV  60
KTEATTSQHH HLLKFHYPLI RQPPPPPQPQ TTCRPEQNGV VDFEAIKAKI LAHPQYSSLL  120
EAYMECQKVG APPQVVERLV AARQEFEARQ RSSMVSGETI KDPELDQFME AYYDMLVKYR  180
EELSRPIQEA MDFMRRIESQ LTSLCNGPVR IFNSDEKCEG MGSSEEEQEN SGGETELPEI  240
DPRAEDRELK NHLLRKYSGY LSSLKQELSK KKKKGKLPKE ARQKLLNWWE LHYKWPYPSE  300
TEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMQFMVM DGLHPPSAAL YIDGHYMTDG  360
HYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452690.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041351e-175KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A1S3BUG30.0A0A1S3BUG3_CUCME; homeobox protein knotted-1-like 2
STRINGXP_008452690.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-129KNOTTED-like from Arabidopsis thaliana