PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016767P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 33314.6 Da PI: 6.9215 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.1 | 4.4e-29 | 26 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF+P+de+l+ +yL +k++g++ ++ + ik+++ ++++P dLp ++++k+wy+++ ++ ++++g +ksgyW+ +g+ MELO3C016767P1 26 LPPGCRFSPSDEQLLRFYLSNKASGHN-DC-NLIKDLNPFDYDPFDLPDsacfsyGSNGRKKHWYYYAVTAFRENRG---WIRMKSGYWRRKGRV 115 79**********************999.55.68**************944777654445778*****9988766543...333579********* PP NAM 90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 kev+ + g + g+k+t+vfy g + +k+ kt+W+m ey+l MELO3C016767P1 116 KEVTGHPGVVLGMKRTFVFYLGnSIKKALKTNWIMYEYAL 155 ********************874667888*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-34 | 22 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.873 | 26 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-19 | 27 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MELPQSLQPP PPPPPPSSSS SFSSSLPPGC RFSPSDEQLL RFYLSNKASG HNDCNLIKDL 60 NPFDYDPFDL PDSACFSYGS NGRKKHWYYY AVTAFRENRG WIRMKSGYWR RKGRVKEVTG 120 HPGVVLGMKR TFVFYLGNSI KKALKTNWIM YEYALDDHFK ASLVLHRVFV SGRGNRISGN 180 GLSSYGDGSV SAVCHNGNQQ DGIQVNNVVD AEPCEGDAMD TTNVISRHET GRAENSNCLL 240 VIDPFSAPAA TTLQVPSKAC PCEMMTSSPV TPPGTMPAHV IDKQQLISIL EGDFLELADL 300 VE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-19 | 25 | 155 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-19 | 25 | 155 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-19 | 25 | 155 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-19 | 25 | 155 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 25 | 155 | 19 | 145 | NAC domain-containing protein 19 |
4dul_A | 1e-19 | 25 | 155 | 16 | 142 | NAC domain-containing protein 19 |
4dul_B | 1e-19 | 25 | 155 | 16 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452571.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A1S3BU62 | 0.0 | A0A1S3BU62_CUCME; protein CUP-SHAPED COTYLEDON 3-like | ||||
STRING | XP_008452571.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 7e-21 | NAC domain containing protein 96 |