PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016444P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 434aa MW: 48774.4 Da PI: 6.7981

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016444P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.5	2.8e-49	50	175	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ MELO3C016444P1 50 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTED 143 79*************************.89***********8778899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg +t+W+m+eyrl MELO3C016444P1 144 FRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 175 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-55	47	195	IPR003441	NAC domain
PROSITE profile	PS51005	55.264	49	196	IPR003441	NAC domain
Pfam	PF02365	9.8E-25	51	175	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MAIAAAARSS STRMRQEEIS SNKTNHDDNN NNCEDHDDID HDQHEHDVVM PGFRFHPTEE 60 ELVEFYLRRK VEGKRFNVEL ITFLDLYRYD PWELPALAAI GEKEWFFYVP RDRKYRNGDR 120 PNRVTTSGYW KATGADRMIR TEDFRSIGLK KTLVFYSGKA PKGIRTSWIM NEYRLPHHET 180 ERYQKAEISL CRVYKRAGVE NHPSLPRSLP SRASSSRMTT SSTPKSNLLP GGGSVNVVQT 240 SSSSTDKFPT SFESQFHHHQ LQIGSGVEAT AADASATSSC EEVTTVLGLS KQNPFPTSPL 300 LNMAATSSLQ IPASASTTPN CMEEDDHQSI ILHNKQQQLL PSSSSLILPT YTSFFSPSSN 360 NSLDDLQKLI HYQQQQPPLS ASPATIINSL PSQYYQPTPP PPPQQLALNT LPVVFSDRLW 420 EWNSIQDAAN PFK*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MAIAAAARSS STRMRQEEIS SNKTNHDDNN NNCEDHDDID HDQHEHDVVM PGFRFHPTEE  60
ELVEFYLRRK VEGKRFNVEL ITFLDLYRYD PWELPALAAI GEKEWFFYVP RDRKYRNGDR  120
PNRVTTSGYW KATGADRMIR TEDFRSIGLK KTLVFYSGKA PKGIRTSWIM NEYRLPHHET  180
ERYQKAEISL CRVYKRAGVE NHPSLPRSLP SRASSSRMTT SSTPKSNLLP GGGSVNVVQT  240
SSSSTDKFPT SFESQFHHHQ LQIGSGVEAT AADASATSSC EEVTTVLGLS KQNPFPTSPL  300
LNMAATSSLQ IPASASTTPN CMEEDDHQSI ILHNKQQQLL PSSSSLILPT YTSFFSPSSN  360
NSLDDLQKLI HYQQQQPPLS ASPATIINSL PSQYYQPTPP PPPQQLALNT LPVVFSDRLW  420
EWNSIQDAAN PFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	51	196	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	51	196	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	51	196	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	51	196	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	51	196	22	168	NAC domain-containing protein 19
3swm_B	2e-54	51	196	22	168	NAC domain-containing protein 19
3swm_C	2e-54	51	196	22	168	NAC domain-containing protein 19
3swm_D	2e-54	51	196	22	168	NAC domain-containing protein 19
3swp_A	2e-54	51	196	22	168	NAC domain-containing protein 19
3swp_B	2e-54	51	196	22	168	NAC domain-containing protein 19
3swp_C	2e-54	51	196	22	168	NAC domain-containing protein 19
3swp_D	2e-54	51	196	22	168	NAC domain-containing protein 19
4dul_A	1e-54	51	196	19	165	NAC domain-containing protein 19
4dul_B	1e-54	51	196	19	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681858	0.0	LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452197.1	0.0	PREDICTED: NAC domain-containing protein 55
TrEMBL	A0A1S3BTB3	0.0	A0A1S3BTB3_CUCME; NAC domain-containing protein 55
STRING	XP_008452197.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-106	NAC domain containing protein 35