PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016356P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 387aa    MW: 44377.1 Da    PI: 7.0815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016356P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3971.2e-3067170199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed+ g+ W+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F++  +r++ 
  MELO3C016356P1  67 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPlHRNQD 161
                     89****************************66677899*************************************************54345666 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     ++++ ++r+
  MELO3C016356P1 162 RFFIDWRRR 170
                     679999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-4062171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-2964165IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-2465154No hitNo description
SMARTSM010191.2E-1967171IPR003340B3 DNA binding domain
PROSITE profilePS5086314.63567171IPR003340B3 DNA binding domain
PfamPF023626.7E-2867170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDDFASSSSR FHHHDYYNNK DRRIRDFDDE QQQRKQQQDQ EMEEESCNNN SSNNNNCSIF  60
VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED RCGKLWRFRY  120
SYWTSSQSYV MTKGWSRFVK DKRLDAGDIV SFQRPLHRNQ DRFFIDWRRR PPHPAVDMPF  180
HFHRHDGGTS AAQFPPPPPP HHHFQLHSQW NNNPVATPLS LQRDHVLHLP QYNNNVSLFH  240
NTYNHHHHHH NRYLDGSYGG ASVFYHLRSP IAPPQIESVP VVVDGNGGNG TGGGSGIGRT  300
SAAKTTLRLF GVDMECEVSD DECDVATTSK TMTSSSQFHV YNGMPMPMLT PMTMQMPTSN  360
DNISTMEFFE KGKSSMSSMS SFDFGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-60611712114B3 domain-containing transcription factor NGA1
5os9_B2e-60611712114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901134.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
RefseqXP_016901135.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotO827994e-65NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1S4DZH70.0A0A1S4DZH7_CUCME; B3 domain-containing transcription factor NGA2-like
STRINGXP_008452034.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-61B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]