PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016313P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 313aa    MW: 34421.2 Da    PI: 5.1139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016313P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19102151255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdps    r  r++lg++ taeeAa  +++a+ +l+g
  MELO3C016313P1 102 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTYNTAEEAAMVYDNAAIQLRG 151
                     89*******.**********84....34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-30101159IPR001471AP2/ERF domain
PROSITE profilePS5103223.103102159IPR001471AP2/ERF domain
PfamPF008474.8E-13102151IPR001471AP2/ERF domain
SMARTSM003804.5E-39102165IPR001471AP2/ERF domain
CDDcd000183.68E-32102158No hitNo description
SuperFamilySSF541711.77E-21102159IPR016177DNA-binding domain
PRINTSPR003673.6E-10103114IPR001471AP2/ERF domain
PRINTSPR003673.6E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDFFVPPIKY TEHRNQTRLV SSPLMGPKVV RISVTDADAT DSSSDEEKEE YVCRRVKKFV  60
NEITIEASST GKSSRKKSTG GKSKFASVNR GSLKQMPAGS RKFRGVRQRP WGKWAAEIRD  120
PSRRVRVWLG TYNTAEEAAM VYDNAAIQLR GPTALTNFTP PPVKSSTETT TAVSSGYAST  180
EESNENLSSP TSVLRCLSPS ANDAVSEKVS ATTGKEIRGD ESEKFSDFSF HSNCDTFFPN  240
DIFDFQPPVP SPFDDKLLND ALLKGDYGSS MFINPGDDFE FGFGFGLSTW HTVEDSFLDF  300
SDIFGSDPLL AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20101158159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2098158162ATERF1
3gcc_A3e-2098158162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451973.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUQ21e-65CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A1S3BST10.0A0A1S3BST1_CUCME; ethylene-responsive transcription factor CRF2-like
STRINGXP_008451973.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.28e-54cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]