![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C016285P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 35387.9 Da PI: 11.9199 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.3e-19 | 111 | 161 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge MELO3C016285P1 111 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 161 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.38E-16 | 110 | 170 | No hit | No description |
SMART | SM00380 | 6.1E-34 | 111 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 111 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-31 | 111 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 111 | 168 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-13 | 112 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MNNKMQEQLN NPQFISNSKS FTDIRTLLSN LLLSPHSTNT LDSIFSHCLP SSAAPPTDPP 60 LGSSVYLRQR DLVHQFCLEN RDACSSANLH LHPLGVSTGY GGFPTAVKKK LYRGVRQRHW 120 GKWVAEIRLP QNRMRVWLGT YDTAEAAAYA YDRAAYKLRG EYARLNFPNL KDFRNLEFAD 180 CGRLNALKNS VDAKIQSICL KMKREKAKKN GKKSDPKSAL FLNPFRCRRR RRQWKSGVGA 240 GKWGIRRWFQ KMGFGGRRIL HRRHRRRQDR RSHRRRRRRW WSGKVFVKGT LHWRRCRLSI 300 QI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 107 | 168 | 1 | 63 | ATERF1 |
3gcc_A | 4e-19 | 107 | 168 | 1 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 264 | 278 | RRRQDRRSHRRRRRR |
2 | 270 | 278 | RSHRRRRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008451936.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 3e-53 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A1S3BTG4 | 1e-159 | A0A1S3BTG4_CUCME; ethylene-responsive transcription factor ERF061 | ||||
STRING | XP_008451936.1 | 1e-160 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64380.1 | 2e-54 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|