PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016202P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 412aa    MW: 45095.1 Da    PI: 6.8341
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016202P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.93.4e-1135840911374
            GRAS  11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
                     +v+ ++l++a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+ +s+ ++y+ l+ ++ ++++s++ ++al+ ++ +sP++kfsh+taNqaI +a
  MELO3C016202P1  58 CVAIDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQAIFQA 152
                     68889****************************************************************************************** PP

            GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                     ++ge+rvH+iD+d++qGlQWp L++ LasRp++  slRi g+gs    s++ l++tg+rLa+fA++lg+pfef+++  k  +  ++ +L++++gE
  MELO3C016202P1 153 LDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGS----SSDLLQSTGRRLADFATSLGLPFEFHPVEGKIGNITNPGQLELRSGE 243
                     ********************************************....9**************************877777888*********** PP

            GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                     a++V++++  h l+d ++s       +L+l+ +l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+ +s er++vE++l+g ei+
  MELO3C016202P1 244 AVVVHWMH--HCLYDVTGSDIG----TLRLLSNLKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDSLGMDSVERHVVEQQLFGCEIR 331
                     *******9..888888888888....**********************.789******************************************* PP

            GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     n++a  g +r+ + + +e+W + l+++GFkp++l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  MELO3C016202P1 332 NIIAVGGPKRTGEVK-VERWGDELKRVGFKPLSLRGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 409
                     *********998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.22122389IPR005202Transcription factor GRAS
PfamPF035141.2E-11058409IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLRSLIPHSP INSTSNSPSS MKSKRSDHDH DHDPDSNPST AADSSPDHPP SKRNSIPCVA  60
IDNLQEANDL LPEISELSSP FGTSPERVGA YFAHALQARV ISSCLGTYSP LTIRTLNQTQ  120
SQRIFNALQS YNSISPLIKF SHFTANQAIF QALDGEDRVH VIDLDVMQGL QWPGLFHILA  180
SRPKKIQSLR ISGFGSSSDL LQSTGRRLAD FATSLGLPFE FHPVEGKIGN ITNPGQLELR  240
SGEAVVVHWM HHCLYDVTGS DIGTLRLLSN LKPKLITIVE QDLSHGGSFL GRFVEALHYY  300
SALFDALGDS LGMDSVERHV VEQQLFGCEI RNIIAVGGPK RTGEVKVERW GDELKRVGFK  360
PLSLRGNPAA QASLLLGMFP WKGYTLVEEN GCLKLGWKDL SLLTASAWQP A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1655841029380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451856.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1S3BTL20.0A0A1S3BTL2_CUCME; scarecrow-like protein 23
STRINGXP_008451856.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]