PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C015950P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 449aa MW: 50175.5 Da PI: 6.6192

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C015950P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	42.7	1.3e-13	78	132	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQkYR 54 k+rl WtpeLH++Fv+ ++ s k P+tile m+ + +t+e+++SHLQk++ MELO3C015950P1 78 KQRLIWTPELHQCFVDIFNRT-PSTKLFPRTILEQMSgkYPFVTRENIASHLQKHK 132 79****************9.9999******722567**********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-16	76	137	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.24E-11	77	137	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-11	78	131	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEDTGFSGVN GSCDYLVQSP DHQPLQLVPY HVGCSSHSVG CSSSGINLDR RRVGRKSSSK 60 PKASKKKNGY HQPQGEKKQR LIWTPELHQC FVDIFNRTPS TKLFPRTILE QMSGKYPFVT 120 RENIASHLQK HKKNLNKKDE EENSAKASSK SVPLKIPKES NSQSINPKTS NSNSTFPNSQ 180 LILQSYPNST NPISSQVLLH SHPNSAIPSF DDKTWVQNSQ GCGFSREQFE QFALEQIALE 240 QLYGCLKRSI NHQVDYQQQQ HSFNNNVCES QENPNWALQI GQSSTAPISD LAVSTNLCPP 300 PISANQISGN DGNGIGFHPI MDFNSFGGWN NTNNDPFLDT DLPNFAFGNC YDNPEPLDFR 360 YPLNLNTING FQTDSEQMYY PSINPMENDF TFQQCFDGYN HPNVVPQTFG LGYNEVHAKN 420 NVELRNLDAL AGLNGNSFPV VLQNNIYN*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEDTGFSGVN GSCDYLVQSP DHQPLQLVPY HVGCSSHSVG CSSSGINLDR RRVGRKSSSK  60
PKASKKKNGY HQPQGEKKQR LIWTPELHQC FVDIFNRTPS TKLFPRTILE QMSGKYPFVT  120
RENIASHLQK HKKNLNKKDE EENSAKASSK SVPLKIPKES NSQSINPKTS NSNSTFPNSQ  180
LILQSYPNST NPISSQVLLH SHPNSAIPSF DDKTWVQNSQ GCGFSREQFE QFALEQIALE  240
QLYGCLKRSI NHQVDYQQQQ HSFNNNVCES QENPNWALQI GQSSTAPISD LAVSTNLCPP  300
PISANQISGN DGNGIGFHPI MDFNSFGGWN NTNNDPFLDT DLPNFAFGNC YDNPEPLDFR  360
YPLNLNTING FQTDSEQMYY PSINPMENDF TFQQCFDGYN HPNVVPQTFG LGYNEVHAKN  420
NVELRNLDAL AGLNGNSFPV VLQNNIYN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016901048.1	0.0	PREDICTED: uncharacterized protein LOC107991159
TrEMBL	A0A1S4DYK0	0.0	A0A1S4DYK0_CUCME; uncharacterized protein LOC107991159

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31214	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01760.1	1e-09	response regulator 14