PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015950P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 449aa    MW: 50175.5 Da    PI: 6.6192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015950P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.71.3e-1378132154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQkYR 54 
                     k+rl WtpeLH++Fv+  ++   s k  P+tile m+   + +t+e+++SHLQk++
  MELO3C015950P1  78 KQRLIWTPELHQCFVDIFNRT-PSTKLFPRTILEQMSgkYPFVTRENIASHLQKHK 132
                     79******************9.9999**********722567************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-1676137IPR009057Homeodomain-like
SuperFamilySSF466898.24E-1177137IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1178131IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEDTGFSGVN GSCDYLVQSP DHQPLQLVPY HVGCSSHSVG CSSSGINLDR RRVGRKSSSK  60
PKASKKKNGY HQPQGEKKQR LIWTPELHQC FVDIFNRTPS TKLFPRTILE QMSGKYPFVT  120
RENIASHLQK HKKNLNKKDE EENSAKASSK SVPLKIPKES NSQSINPKTS NSNSTFPNSQ  180
LILQSYPNST NPISSQVLLH SHPNSAIPSF DDKTWVQNSQ GCGFSREQFE QFALEQIALE  240
QLYGCLKRSI NHQVDYQQQQ HSFNNNVCES QENPNWALQI GQSSTAPISD LAVSTNLCPP  300
PISANQISGN DGNGIGFHPI MDFNSFGGWN NTNNDPFLDT DLPNFAFGNC YDNPEPLDFR  360
YPLNLNTING FQTDSEQMYY PSINPMENDF TFQQCFDGYN HPNVVPQTFG LGYNEVHAKN  420
NVELRNLDAL AGLNGNSFPV VLQNNIYN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901048.10.0PREDICTED: uncharacterized protein LOC107991159
TrEMBLA0A1S4DYK00.0A0A1S4DYK0_CUCME; uncharacterized protein LOC107991159
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3121422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-09response regulator 14