PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015748P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 602aa    MW: 65559.2 Da    PI: 5.863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015748P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000464334701355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  MELO3C015748P1 433 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 470
                     67799************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-20288IPR025610Transcription factor MYC/MYB N-terminal
Gene3DG3DSA:3.30.450.403.6E-4652IPR029016GAF domain-like
CDDcd000830.00358414470No hitNo description
PROSITE profilePS5088811.211420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-5433476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-4433475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSYHVYSLGE GIVGQVAVTG KHQWITADEQ IPNFSSTIEY CDGWQTQFSA GIKTIVVVAV  60
VPHGVLQLGS LDKVTEDVNL VTRIRNAFLT LQESSAGEIK PLHSCKSSGY VKGEDASVSK  120
NVGIELSGSG GFESLKTKPD AINVESFKSQ VRLLDDRICG GEPSGCKDTA VGLKQKINVQ  180
SQDSAMDMLN ICGNLLPAEK IMTNGAYFPM NPHPSSVYDG VNHNGMFTRT NHTEMYLQND  240
MEASKTIDMY PSNASLKFPA GYELHEVLGP AFLKDALYLD WQTEYVLGGK AFELSEGMSG  300
SQLTSDSPTE RLLEAVVADV CHSSSDVKSD TSLCKSGQSL LTTERIPEPS TNATTSACSE  360
GYSMGQSQTS FIGEDMQNSL SSSGVCGVMS PKGFSSTYSG TGSEHLDKSL EPAKNSKRRA  420
RPGESSRPRP RDRQLIQDRI KELRELVPNG AKCSIDSLLE RTIKHMLFLQ GITKHADKLT  480
KCANMKLHQK ENGMLGTSNT DQGSSWAVEV GGQLKVCSII VENLNKNGQI LVEMLCEECS  540
HFLEIAEAIR SLGLTILKGI TEAHGEKTWI CFVVEGENNR NIHRMDILWS LVQILQRSST  600
M*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901084.10.0PREDICTED: transcription factor EMB1444
SwissprotP0C7P81e-111LHWL1_ARATH; Transcription factor EMB1444
TrEMBLA0A1S4DYM60.0A0A1S4DYM6_CUCME; transcription factor EMB1444
STRINGXP_008451262.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.21e-112conserved peptide upstream open reading frame 7