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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C015739P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16330.7 Da PI: 7.5054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.2e-21 | 17 | 69 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+G+r+++ +g+++AeIrdps ng +r +lg+f+taeeAa+a+++a+ +++g+ MELO3C015739P1 17 SRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDQAAYAFRGH 69 79********.**********98887..*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.2E-15 | 17 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-24 | 17 | 77 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.04E-27 | 17 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-32 | 18 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.027 | 18 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-36 | 18 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEGKRTGNEG KRSTNESRYR GIRRRPWGKF AAEIRDPSRN GARLWLGTFD TAEEAARAYD 60 QAAYAFRGHL AILNFPNEYQ SGNPNFGAGY GSSAAPGSSS TTTISFGGNY SGNNARRGSG 120 EVIEFEYLDN ELLEELLQSE GEGYNRKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-31 | 18 | 132 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681803 | 0.0 | LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008451255.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 5e-45 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1S3BR43 | 1e-102 | A0A1S3BR43_CUCME; ethylene-responsive transcription factor ERF098-like | ||||
STRING | XP_008451255.1 | 1e-103 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-27 | ERF family protein |
Publications ? help Back to Top | |||
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