PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015476P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 355aa    MW: 40217.1 Da    PI: 7.2774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015476P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-076684826
                    GGGGTS--TTTTT-SS-SS CS
         zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                     f  +G C++G++C+F+H+
  MELO3C015476P1 66 KFTSSGSCPRGEKCNFHHD 84
                    56668*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3615886IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-46085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-66187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-76286IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-56384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77990118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-591116IPR000571Zinc finger, CCCH-type
SMARTSM003560.01992117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-495117IPR000571Zinc finger, CCCH-type
PfamPF046772.1E-38135248IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541979.26E-10136211IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.103.4E-7140218IPR011146HIT-like domain
PfamPF046762.0E-15274351IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSAAEISMKP PNTTLSPYTL TERKAEASDS AKRSSNSVSE SQYWRYEVSQ KRQKYGTSDN  60
NKLCFKFTSS GSCPRGEKCN FHHDIDAREQ SQRGVCFDFL NKGKCERGPD CNFKHSFQNE  120
FDSHSGKRRS GNAGTNRSKE CWFCLSSPNI ESHLIVSVGE NFYCALAKGP LVPDHILVIP  180
VEHFPNTLSL GPDYETEINR LQNCLGKYFK SQGKEVVFFE WVSKRSTHAN LQAVPIPTSR  240
AHVVQNIFDM AAEKLGFKFV ISKSDAPSEG RKLLRTQFDS DHSFFYAELP ECVTLSHVIE  300
ENEIFPAQFG REVLAGLLNM ADKADWRNCA HSKEEETKMA EDFKIRFENF DPNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U1e-14141351675887CWF19-like protein 2
6id1_U1e-14141351675887CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450861.20.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X2
SwissprotQ84WU91e-152C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A1S3BQ840.0A0A1S3BQ84_CUCME; zinc finger CCCH domain-containing protein 64 isoform X2
STRINGXP_008450861.10.0(Cucumis melo)