PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015435P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 250aa    MW: 28047.2 Da    PI: 6.7339
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015435P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed  l   ++++G+g +W + +++ g++R++k+c++rw++yl
   MELO3C015435P1 14 RGPWSPQEDATLTAFIHKHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding39.99.6e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
   MELO3C015435P1  69 GGFTQEEDNVICSLYSTIGSR-WAIIASQLP-GRTDNDVKNHWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.281962IPR017930Myb domain
SuperFamilySSF466892.07E-2711109IPR009057Homeodomain-like
SMARTSM007172.6E-111364IPR001005SANT/Myb domain
PfamPF002491.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231569IPR009057Homeodomain-like
CDDcd001672.35E-81662No hitNo description
PROSITE profilePS5129420.73563117IPR017930Myb domain
SMARTSM007172.8E-1167115IPR001005SANT/Myb domain
PfamPF002493.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2370117IPR009057Homeodomain-like
CDDcd001672.77E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPQ EDATLTAFIH KHGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG FTQEEDNVIC SLYSTIGSRW AIIASQLPGR TDNDVKNHWN TKLKKKFNNS  120
LSEPPNSTMI VTDPSRYSST TANSLKVLHN DHEHNINTNY NMFSSHPRFD QIPMLNNNNN  180
PIIPELSTSS SSISLPNIEQ NHLEEFSGPG SDEAEIILQS YFHGVYDYNQ YPYEDDVMEG  240
FGVSNYMGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141187109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450812.10.0PREDICTED: transcription factor RAX2-like
SwissprotQ9SJL73e-69RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A1S3BPH80.0A0A1S3BPH8_CUCME; transcription factor RAX2-like
STRINGXP_008450812.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-71MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]