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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C015379P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 33493.8 Da PI: 5.9091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.4e-10 | 163 | 207 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L MELO3C015379P2 163 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 207 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.07E-15 | 156 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.67E-11 | 156 | 212 | No hit | No description |
PROSITE profile | PS50888 | 16.526 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-16 | 160 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 163 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-12 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAGIPSEGLG DDFFEQMLAV PPSYGGAGGG DMVSLPMGLQ LGSGGGGGGN GGGMGMPLGL 60 NLEQGFLRQE RFREEVDGGH NSNSNNNASS SSTASSGITE RDSSMQHMTN LFPTFGHLQT 120 QQLRPPPPLH LHQTNTGTVA AVPQPPQVRP RVRARRGQAT DPHSIAERLR RERIAERMKA 180 LQELVPSCNK TDRAAMLDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DVPLSSVEGE 240 GIESGNNQQA WEKWSSDGTE QQVAKLMEED VGAAMQFLQS KALCIMPISL ASAIFRTHQA 300 DPQILVKPEM NTP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681806 | 1e-165 | LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025. | |||
GenBank | LN713256 | 1e-165 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008450748.1 | 0.0 | PREDICTED: transcription factor UNE12-like isoform X2 | ||||
Swissprot | O22768 | 1e-83 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A1S3BPW1 | 0.0 | A0A1S3BPW1_CUCME; transcription factor UNE12-like isoform X2 | ||||
STRING | XP_008450747.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 1e-55 | bHLH family protein |
Publications ? help Back to Top | |||
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