PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015357P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 483aa    MW: 54131.6 Da    PI: 6.7566
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015357P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49141422128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     p+GfrFhPtdeel ++yLk+k+ g++  + + i++vdi+++ePw+Lp+  + ++++++w+fFs +d ky++g+r+nratk+gyWk+tgkd+++++
  MELO3C015357P1  14 PVGFRFHPTDEELFNHYLKNKIVGQESLV-QYIRQVDICNFEPWELPSlsNDQTGDHQWFFFSAQDFKYSNGRRSNRATKTGYWKSTGKDRKIMA 107
                     89************************777.88***************4335556888************************************** PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++ l+g+kktLvfy+gr p+g kt+Wv+hey+l
  MELO3C015357P1 108 RgTKILIGTKKTLVFYSGRVPSGIKTNWVIHEYHL 142
                     855667****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-549161IPR003441NAC domain
PROSITE profilePS5100552.59913162IPR003441NAC domain
PfamPF023651.9E-2614142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MANCLLLPPH NLFPVGFRFH PTDEELFNHY LKNKIVGQES LVQYIRQVDI CNFEPWELPS  60
LSNDQTGDHQ WFFFSAQDFK YSNGRRSNRA TKTGYWKSTG KDRKIMARGT KILIGTKKTL  120
VFYSGRVPSG IKTNWVIHEY HLHPDPNLAE LKSFVICVLK RKFEESDVLM FEEAEPNGLL  180
TSTNVATGNQ NRETPGNGHS LFQSDLQVSD YGVSELESLL FSDPEPTSMD FQVINSYGTH  240
INGHTDEDVN PVLVDDENCF DEGTPNSSNS NFNWEEMLDL INDDQGGGFS GNTGIDTALS  300
WKYDHASPSF FGESACSRIQ TKSIPMIKES RRSPLTSKIL RLDHSDDSDR GTRNFSSQHQ  360
PKSHKALDHV DTPQNVQSKR ETQIQVVSSL SKAEAVPKRI KIVRPAATSN KDIVVDQQSE  420
VENRRLKSTG HGSLKSGGRC SSSILTTKCI DHKLSPASYF ARACLGFILF ITVAREVLLY  480
GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-401314215140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450706.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A1S3BQH10.0A0A1S3BQH1_CUCME; protein CUP-SHAPED COTYLEDON 3-like
STRINGXP_008450706.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.16e-51NAC transcription factor-like 9