PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C015320P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YB

Protein Properties

Length: 128aa MW: 14694.5 Da PI: 6.6281

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C015320P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	134.4	3.4e-42	9	97	7	95
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lPianv rimkk++P+++kisk+ak+t+qec+ efisfvtsea++kc++e+r+t+ngdd++wa+++lG+++y+e+ ++ l k+re+e+ MELO3C015320P1 9 QLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAER 97 69************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.7E-40	4	109	IPR009072	Histone-fold
SuperFamily	SSF47113	1.26E-31	7	103	IPR009072	Histone-fold
Pfam	PF00808	8.2E-26	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.7E-13	37	55	No hit	No description
PRINTS	PR00615	1.7E-13	56	74	No hit	No description
PRINTS	PR00615	1.7E-13	75	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MGENWESLQL PIANVERIMK KIIPQKGKIS KEAKKTMQEC ANEFISFVTS EAAQKCHNEN 60 RRTLNGDDIY WAFGSLGLDN YAEASSMLLL KFREAERIKA SDKAITFQHH QHGVEDHEYN 120 YEHHQLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	1e-34	1	94	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-34	1	94	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451143.1	1e-76	PREDICTED: beta-galactosidase 15-like
Swissprot	O04027	5e-41	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A1S3BQ87	3e-75	A0A1S3BQ87_CUCME; Beta-galactosidase
STRING	XP_008451143.1	5e-76	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	2e-43	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]