PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 224aa MW: 25485.6 Da PI: 10.3206

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C015239P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.2	1.8e-17	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ t+ kR+ g++KK +ELS+LC++e++ iifs+ MELO3C015239P1 11 IANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSP 50 89*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.283	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-25	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-25	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.69E-34	2	85	No hit	No description
PRINTS	PR00404	3.4E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-18	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MTRKKVKLAY IANDSARKAT YKKRKRGLMK KVSELSTLCG IEACAIIFSP YDSQPELWPS 60 PIGVQRVLSQ FKKMPEMEQS KKMVNQETFL RQRIAKANEQ LKKMRKDNRE KEITRLMFQS 120 LTAAKGLHGL NMLDLNDLGW LIDQNLKDIT IRIDSLKKPS LPQPQAQAQA QAPPTTQPQT 180 AAWLMELVSP QDQMGFVGDD MLLPFGDQTY NHNNAMWSNA FFP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAYIANDSARKATYKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450513.1	1e-166	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	2e-64	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A1S3BPF2	1e-165	A0A1S3BPF2_CUCME; agamous-like MADS-box protein AGL80
STRING	XP_008450513.1	1e-166	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-66	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]