PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015155P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 472aa    MW: 53127.1 Da    PI: 6.2455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015155P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS468.73.3e-143464681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+ g+l +a+ +L ++s+laspdgd+mqR+aayf+eALa r+++++++lyka+++++ +   +see+ + klf+e++P+lk+ +
  MELO3C015155P1  46 LIHLLLTCANHVAVGSLDRANLALDQISHLASPDGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIP--MVSEEILVKKLFFEMFPFLKVVF 138
                     689*************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege+++HiiD+++++ +QW+aLlq L+ Rpegpp+lRiTgv++    +ke l ++++rL++ Ae+l++pf+fn  v +rledl+
  MELO3C015155P1 139 VLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHP----QKEILDQMARRLTNEAEKLDIPFQFNS-VISRLEDLD 228
                     ******************************************************....9**************************.79******* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdevLk 229
                     +e+Lrvk+gEala+n+vlqlh+ll                                                        + s++ + ++d++L+
  MELO3C015155P1 229 MEKLRVKTGEALAINSVLQLHNLLgydnealqkpspsaaknvngvqysryphlnqttlselldkdmvngcspspdsvsssALSQANATKIDSFLN 323
                     ****************************************************************************997744444444789**** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      ++sl Pkv+vv+eq+++hn+++ +er+leal++y+a+fd+le++++r+s er k+E++l+g+ei+n++acegaer+erhe+ e+W++r++ aGF
  MELO3C015155P1 324 GLWSLTPKVMVVTEQDSNHNGTTVMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKHENWSQRFDVAGF 418
                     *********************************************************************************************** PP

            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++vpls++ + qa++ll+ ++  gyr++ee+g+++++W+drpL+svSaWr
  MELO3C015155P1 419 RQVPLSYYGMLQARSLLQGYGCGGYRMKEENGCVMICWQDRPLFSVSAWR 468
                     *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.69420448IPR005202Transcription factor GRAS
PfamPF035141.1E-14046468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFQDEGTSSI TSSPLQFFTM MSLSPKLGSP YPWLRELKSE ERGLYLIHLL LTCANHVAVG  60
SLDRANLALD QISHLASPDG DTMQRIAAYF AEALADRILK TWPGLYKAFN STKIPMVSEE  120
ILVKKLFFEM FPFLKVVFVL TNQAIVEAME GEKMIHIIDL NANETAQWLA LLQVLSVRPE  180
GPPHLRITGV HPQKEILDQM ARRLTNEAEK LDIPFQFNSV ISRLEDLDME KLRVKTGEAL  240
AINSVLQLHN LLGYDNEALQ KPSPSAAKNV NGVQYSRYPH LNQTTLSELL DKDMVNGCSP  300
SPDSVSSSAL SQANATKIDS FLNGLWSLTP KVMVVTEQDS NHNGTTVMER LLEALHTYAA  360
IFDCLESNMS RTSLERLKLE KMLFGEEIKN IIACEGAERK ERHEKHENWS QRFDVAGFRQ  420
VPLSYYGMLQ ARSLLQGYGC GGYRMKEENG CVMICWQDRP LFSVSAWRCC K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-40294671377Protein SCARECROW
5b3h_D2e-40294671377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450378.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3BP340.0A0A1S3BP34_CUCME; scarecrow-like protein 3 isoform X1
STRINGXP_008450378.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]