PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015102P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 258aa    MW: 29938 Da    PI: 8.4495
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015102P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.8e-36291212103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sw ++ ++f+v+ ++efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  e+         weF +++Fkkg+k+ll +
  MELO3C015102P1  29 FLSKTYDLVEDPTTDHIVSWGQSLTTFIVWRPSEFATHILPNYFKHNNFSSFVRQLNTYGFKKIVAER---------WEFGNENFKKGEKQLLLE 114
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  MELO3C015102P1 115 IQRRKSH 121
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3720112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.86E-3124118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5225118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEEKMEDNYN VGLCSSSVES QKANNPAPFL SKTYDLVEDP TTDHIVSWGQ SLTTFIVWRP  60
SEFATHILPN YFKHNNFSSF VRQLNTYGFK KIVAERWEFG NENFKKGEKQ LLLEIQRRKS  120
HNHNNNNQQI PFQFFHLHQQ QQLSLCYTTT SSADPDILTA LTQDNRRLRR RNFMLLSELA  180
QMKNLYSDII YFIQNNVKPL DNKYCNRSVP KLVELDSPSS PMPMSPEIRL EEGSGMVKLF  240
GVPIRGKKRV LPEESEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-212311815120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450326.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ7XHZ05e-71HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A1S3BPZ90.0A0A1S3BPZ9_CUCME; heat stress transcription factor B-4b-like
STRINGXP_008450326.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-62heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]