PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 274aa MW: 30322.4 Da PI: 8.6229

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014944P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.8e-18	122	176	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ ++++ LA++l+L rqV vWFqNrRa+ k MELO3C014944P1 122 RKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTK 176 778899***********************************************98 PP
2	HD-ZIP_I/II	121.2	5.3e-39	122	210	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q++lLEesF+++++L+p++K+ lar+L+l prqv+vWFqnrRARtk kq+E+d+e Lk+++++l++en+rL+kev+eL+ + MELO3C014944P1 122 RKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTKVKQTEVDCELLKKCCETLTDENRRLQKEVQELK-A 210 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-18	112	179	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-17	114	181	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.232	118	178	IPR001356	Homeobox domain
SMART	SM00389	3.7E-14	120	182	IPR001356	Homeobox domain
CDD	cd00086	8.81E-17	122	179	No hit	No description
Pfam	PF00046	1.5E-15	122	176	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	153	176	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.2E-10	178	211	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	6.6E-25	178	221	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGFDDFSKTG LVLGLGLSEL ADDQRTTLKK KPAPCSSSSL DFEPCVLTLG FSGGGGDPHR 60 KVIDHEGVRH LYRQTSPHSS AVCSSFSGKV KRERDLSSEE VELERVCWRV SDEDDDGCNN 120 TRKKLRLSKQ QSALLEESFK QNSTLNPKQK QGLARQLNLL PRQVEVWFQN RRARTKVKQT 180 EVDCELLKKC CETLTDENRR LQKEVQELKA IKLAKPVYMQ MSGATLTICP SCERVGTGGH 240 GGVADGNSNS KPKFSMPPNP LFYNPFSNPS AAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	126	TRKKLRL
2	170	178	RRARTKVKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681857	0.0	LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450165.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	4e-86	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1S3BNL6	0.0	A0A1S3BNL6_CUCME; homeobox-leucine zipper protein HAT22-like
STRING	XP_008450165.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-88	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]