PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014922P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 160aa MW: 18042.9 Da PI: 10.2553

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014922P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.6	1.1e-31	16	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+G+rF Ptd+elv +yLk+kv + +l++ ++i+++di+ ++Pw Lp ++++ +fFsk+++ ++r++ g+Wk+ gk+k +ls MELO3C014922P2 16 LPVGYRFCPTDQELVAHYLKRKVFHLPLPA-SIIPDFDIFLTDPWALPG---DSKEKRFFFSKQKSF------SRRSAGCGIWKSIGKEKLILSP 100 799*************************.89***********3...345577888887664......5789999**********9 PP NAM 96 ..kgelvglkktLvfykgr.apkgektdWvmheyrl 128 ++lvg +ktLvf + + ++ + t+Wvmheyrl MELO3C014922P2 101 gpMNQLVGSRKTLVFSESKfCETKSATRWVMHEYRL 136 888899******7751455578******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-36	12	141	IPR003441	NAC domain
PROSITE profile	PS51005	37.511	16	159	IPR003441	NAC domain
Pfam	PF02365	2.2E-23	17	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MDNISPFVLN GGSIRLPVGY RFCPTDQELV AHYLKRKVFH LPLPASIIPD FDIFLTDPWA 60 LPGDSKEKRF FFSKQKSFSR RSAGCGIWKS IGKEKLILSP GPMNQLVGSR KTLVFSESKF 120 CETKSATRWV MHEYRLPRSA SPTTPNSTQV QTNLTVDLY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-21	12	136	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681857	1e-164	LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBank	LN713260	1e-164	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450148.1	1e-109	PREDICTED: NAC domain-containing protein 83 isoform X2
Swissprot	Q9FY93	1e-36	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1S3BPK5	1e-107	A0A1S3BPK5_CUCME; NAC domain-containing protein 83 isoform X2
STRING	XP_008450147.1	1e-107	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-31	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]