PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 342aa MW: 37068.3 Da PI: 7.0281

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014590P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.3	4.7e-32	167	223	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+RgsgGrF MELO3C014590P1 167 QEPVFVNAKQYQGILRRRQARAKAEVENKL-IKVRKPYLHESRHQHAMRRARGSGGRF 223 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-35	165	226	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.157	166	226	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.4E-28	168	223	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-23	169	191	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	171	191	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-23	200	223	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MQSKSKSVNQ PESEPPNMQQ TSSYSEPWWR SIGYNHISPP AAGGNVSNST SLECTNGASE 60 SNDGQSMSND DLNEDDDDDT TKDSHASYGQ VQNNCQHAVS AAPIVHSGCI TQPPQLELVG 120 HSIACASNPY QDPYYAGVMA AYGHQPGYPP FLGMPHARMA LPLEVTQEPV FVNAKQYQGI 180 LRRRQARAKA EVENKLIKVR KPYLHESRHQ HAMRRARGSG GRFAKKNETN SLGSTMKDKD 240 SGSGQAISSH SAGSSGSEAA HCALAETWNS SNGQQEARTQ LHEAYEARSY VNGSSQFHNY 300 SSFQASSYGL RSGERGDDGD CSGQQRSISE NQAAQRRLAI K*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MQSKSKSVNQ PESEPPNMQQ TSSYSEPWWR SIGYNHISPP AAGGNVSNST SLECTNGASE  60
SNDGQSMSND DLNEDDDDDT TKDSHASYGQ VQNNCQHAVS AAPIVHSGCI TQPPQLELVG  120
HSIACASNPY QDPYYAGVMA AYGHQPGYPP FLGMPHARMA LPLEVTQEPV FVNAKQYQGI  180
LRRRQARAKA EVENKLIKVR KPYLHESRHQ HAMRRARGSG GRFAKKNETN SLGSTMKDKD  240
SGSGQAISSH SAGSSGSEAA HCALAETWNS SNGQQEARTQ LHEAYEARSY VNGSSQFHNY  300
SSFQASSYGL RSGERGDDGD CSGQQRSISE NQAAQRRLAI K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-20	166	231	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449708.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_008449709.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Swissprot	Q9LXV5	5e-76	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A1S3BNK4	0.0	A0A1S3BNK4_CUCME; nuclear transcription factor Y subunit A-1-like isoform X1
STRING	XP_008449707.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	2e-70	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]