PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014564P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 367aa MW: 37742.6 Da PI: 7.5431

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014564P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214.3	2.8e-66	143	301	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 s t++CqdCGnqakkdC+h+RCRtCC+srgfdCathvkstWvpaa+rrerq ++ +a++ a s+ +++ +k++r ++++s+t++s++++ MELO3C014564P1 143 SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSaSTSGAKKPRL---IPSQTTSHTSTSNTTP 234 57899*******************************************88777665555443325555666665...4777788899999999 PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++l+tss lP +++++avf+cvrv++vddg++e+aY++ v+igGhvfkG+LydqG+e MELO3C014564P1 235 PRSLDTSSshqdvgnkeaLPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVE 301 999999999999***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.7E-62	145	301	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.4E-26	147	189	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.5E-28	253	300	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MWSAAAQRSL NYGLGSEMGM VGLRDVYVVA PASSFNQNPH QHDVNLLSDP HSLAVSNPAT 60 ALGVGVGVGV IPLLTAGPCV GVEEENLFGN RSSNRGGGIQ FQQSTQHYLK KTPSGSLDHV 120 SGTNNELIGG GIGGSGGLAS SSSATTTCQD CGNQAKKDCS HRRCRTCCRS RGFDCATHVK 180 STWVPAARRR ERQLMAVTAT AAADGSSAST SGAKKPRLIP SQTTSHTSTS NTTPPRSLDT 240 SSSHQDVGNK EALPGQIRAQ AVFKCVRVTA VDDGDDEYAY HAMVKIGGHV FKGFLYDQGV 300 EAGDGFPNVS ELHLGDGVGG GGTINNRNGS SSSPLVDPSD VYNTAASGSG GVPGFLGGSN 360 YGNQIS*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MWSAAAQRSL NYGLGSEMGM VGLRDVYVVA PASSFNQNPH QHDVNLLSDP HSLAVSNPAT  60
ALGVGVGVGV IPLLTAGPCV GVEEENLFGN RSSNRGGGIQ FQQSTQHYLK KTPSGSLDHV  120
SGTNNELIGG GIGGSGGLAS SSSATTTCQD CGNQAKKDCS HRRCRTCCRS RGFDCATHVK  180
STWVPAARRR ERQLMAVTAT AAADGSSAST SGAKKPRLIP SQTTSHTSTS NTTPPRSLDT  240
SSSHQDVGNK EALPGQIRAQ AVFKCVRVTA VDDGDDEYAY HAMVKIGGHV FKGFLYDQGV  300
EAGDGFPNVS ELHLGDGVGG GGTINNRNGS SSSPLVDPSD VYNTAASGSG GVPGFLGGSN  360
YGNQIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449658.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
Swissprot	Q94CK9	1e-93	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1S3BMJ0	0.0	A0A1S3BMJ0_CUCME; protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
STRING	XP_008449658.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	5e-63	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]