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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014527P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 173aa MW: 19150.7 Da PI: 10.1252 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 226.9 | 5.1e-70 | 6 | 162 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +s+f++vtvrCGhC++llsvn+ + q+++ ++ +++ + +++ + +++ + ++s+ +s++ MELO3C014527P1 6 MASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDS--QQG--HKQQQVNAGDSSKDRAS--SSSSAKSTKIG 94 689***************************************************9997..222..22233333333333333..33333444444 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +l+++ +++ r+pp+ r +krqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl MELO3C014527P1 95 SLDSSAERDQHRIPPI-R--QKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGL 162 5788889999998884.4..6************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-72 | 7 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.9E-8 | 111 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.3E-5 | 116 | 156 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 6.76E-6 | 116 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSLDMMASER VCYVHCNFCN TILAVSVPCN SMFTLVTVRC GHCSNLLSVN MGASLQVVPP 60 QDSQQGHKQQ QVNAGDSSKD RASSSSSAKS TKIGSLDSSA ERDQHRIPPI RQKRQRVPSA 120 YNRFIKEEIQ RIKAKNPDIS HREAFSTAAK NWAHFPHIHF GLKLDGNNKQ TK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 3e-72 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 3e-72 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449608.1 | 1e-113 | PREDICTED: putative axial regulator YABBY 2 | ||||
Refseq | XP_016900784.1 | 1e-113 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 3e-71 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1S4DXR9 | 1e-111 | A0A1S4DXR9_CUCME; putative axial regulator YABBY 2 | ||||
STRING | XP_008449608.1 | 1e-112 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-69 | YABBY family protein |
Publications ? help Back to Top | |||
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