PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C014519P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 694aa MW: 75982.3 Da PI: 7.4734

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014519P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.5	5.4e-09	406	443	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + MELO3C014519P1 406 FEHflHPYPKDSDKIILAKQTGLTRSQVSNWFINARVR 443 554459******************************88 PP
2	BELL	111.7	4.2e-36	261	332	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rq+lq+kkakL+ +l+eV+++Y+qy++q++ v+s Fe++aglgsak+Y+slAl +iS++FrcLkdai++qi MELO3C014519P1 261 QRQDLQMKKAKLIGMLDEVEQKYRQYHQQMRGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICGQI 332 699********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-60	182	330	IPR006563	POX domain
Pfam	PF07526	7.4E-46	187	328	IPR006563	POX domain
PROSITE profile	PS50071	11.888	384	447	IPR001356	Homeobox domain
CDD	cd00086	6.43E-12	387	448	No hit	No description
SMART	SM00389	2.2E-9	387	451	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-17	388	453	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-28	390	453	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-17	404	443	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MATYFHGGSE IQTNSDGIHT LYLMNPNYVP YSDTHSQSSH NMLFLNPSST HALNPSTLPH 60 APPSNNHFVG IPLPTTDSSR PSFHEISTLH PHRLHYNLWA PVDQQQQQQQ SLHADSADLT 120 FRRPTAQQGL SLSLSSQQSL YRTLSAEQEI QGGGGGGAPS GEEIRVSGNS GTSVSVVSSS 180 ITGVQSVILG SKYLKAAQEL LDEVVHVGKA NYKTDKFGDG TKDNKMKMKK ESTATIGGGS 240 SAATGGGETT SKSVAELSTA QRQDLQMKKA KLIGMLDEVE QKYRQYHQQM RGVVSCFEQA 300 AGLGSAKSYA SLALETISKQ FRCLKDAICG QIKATGKSLG EDQENWLGSS KMEGSSTTSS 360 SRLRYVDHHL RQQRALQQLG MIQHNTWRPQ RGLPERAVSV LRAWLFEHFL HPYPKDSDKI 420 ILAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEIKEQ EQNGNSQDMI RGGGSDHHHH 480 QNNNNNHTHN DPQYSKTENL MNNNPSHSSI SSSSILGIGS TTASGGFNLV PPSSDNNILL 540 STPKKPRTNT ITTAVTTTNN NAVVPENPSS ESMLLRDIDI VNSNTYPVGE IGSTFNSELL 600 TPRFHANGVS LTLALPHNNS DHLSLSPNQT NYHHLSSNQN LHLGRSSRLD ITNHHPGPPD 660 FSDVNPAAPP AYDHVDMQTT KRFAAQLLPD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MATYFHGGSE IQTNSDGIHT LYLMNPNYVP YSDTHSQSSH NMLFLNPSST HALNPSTLPH  60
APPSNNHFVG IPLPTTDSSR PSFHEISTLH PHRLHYNLWA PVDQQQQQQQ SLHADSADLT  120
FRRPTAQQGL SLSLSSQQSL YRTLSAEQEI QGGGGGGAPS GEEIRVSGNS GTSVSVVSSS  180
ITGVQSVILG SKYLKAAQEL LDEVVHVGKA NYKTDKFGDG TKDNKMKMKK ESTATIGGGS  240
SAATGGGETT SKSVAELSTA QRQDLQMKKA KLIGMLDEVE QKYRQYHQQM RGVVSCFEQA  300
AGLGSAKSYA SLALETISKQ FRCLKDAICG QIKATGKSLG EDQENWLGSS KMEGSSTTSS  360
SRLRYVDHHL RQQRALQQLG MIQHNTWRPQ RGLPERAVSV LRAWLFEHFL HPYPKDSDKI  420
ILAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEIKEQ EQNGNSQDMI RGGGSDHHHH  480
QNNNNNHTHN DPQYSKTENL MNNNPSHSSI SSSSILGIGS TTASGGFNLV PPSSDNNILL  540
STPKKPRTNT ITTAVTTTNN NAVVPENPSS ESMLLRDIDI VNSNTYPVGE IGSTFNSELL  600
TPRFHANGVS LTLALPHNNS DHLSLSPNQT NYHHLSSNQN LHLGRSSRLD ITNHHPGPPD  660
FSDVNPAAPP AYDHVDMQTT KRFAAQLLPD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	9e-16	393	451	5	63	Homeobox protein Meis2
3k2a_B	9e-16	393	451	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449597.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A1S3BLS1	0.0	A0A1S3BLS1_CUCME; BEL1-like homeodomain protein 1
STRING	XP_008449596.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	8e-90	BEL1-like homeodomain 1